RnoINT0169150 @ rn6
Intron Retention
Gene
ENSRNOG00000003707 | Zmym3
Description
zinc finger MYM-type containing 3 [Source:RGD Symbol;Acc:1564967]
Coordinates
chrX:71310772-71311585:-
Coord C1 exon
chrX:71311513-71311585
Coord A exon
chrX:71311067-71311512
Coord C2 exon
chrX:71310772-71311066
Length
446 bp
Sequences
Splice sites
5' ss Seq
GCAGTAAGT
5' ss Score
9.07
3' ss Seq
TGCCCCGCCTACTCCCACAGTTC
3' ss Score
8.28
Exon sequences
Seq C1 exon
GTACAGAAGAGAAGCGAGCGCGTTAGAAGAGCAGAACCTCCAAAACCCGAGGTTGTGGACTCCACTGAGAGCA
Seq A exon
GTAAGTAGGATTTGAGAAAGTGGGACCTGGGAATTCTGGGTGCAGAGAAGAGCTAAAGGTGGGATTCTGACAGGGCATGGGTCTTCTGGCTCCTGCAGTTCCTCTCTGCAGAAAGAGAAGTGCCTGTCTGTACTGTGGGTTGGCATGGGAACCAAGAGGTAGTCGGGGGGGAAACTGAAAACAAGAACAGTAAGAATAGTAAGTTTCAACTATACTGTCCCTCTCCCCAGTCTTCTCTCTTAGACCCCCCCCTTCCTCTCCTGAATATTGTATAATAACCATGAGTGGCTTAAGATCCAGTGTAATGGGAGAGGAAGTAGAAGGGTCAGAACAAGAGGAGTACCAGAGATCCCAGGATCAGTATTGAACTTACTATTGATCTGATCATCAAATGGCTGGAGATCTGTTCTGGTGGTCTTTTCTCACTGCCCCGCCTACTCCCACAG
Seq C2 exon
TTCCAGTGTCAGATGAGGATTCTGATGCCATGGTAGATGACCCCAATGATGAGGACTTTGTGCCATTCCGGCCCCGGCGCTCTCCTCGCATGTCCCTGCGCTCAAGTATGGCACAAAGGGCTGGGCGCTCTTCAATGGGCACCAAGATGTCTTGTGCACATTGCCGGACACCACTGCAGAAGGGGCAGACGGCCTATCAGCGCAAGGGGTTGCCTCAGCTCTTCTGTTCTTCATCTTGTCTCACTACTTTCTCCAAGAAGCCCTTGGGCAGAAAGACCTGTACCTTCTGCAAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003707:ENSRNOT00000004972:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.538
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF064679=zf-FCS=WD(100=41.4),PF064679=zf-FCS=PU(29.5=13.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCGCGTTAGAAGAGCAGAAC
R:
AGGTACAGGTCTTTCTGCCCA
Band lengths:
342-788
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]