HsaINT0186042 @ hg38
Intron Retention
Gene
ENSG00000146463 | ZMYM4
Description
zinc finger MYM-type containing 4 [Source:HGNC Symbol;Acc:HGNC:13055]
Coordinates
chr1:35415466-35418572:+
Coord C1 exon
chr1:35415466-35415714
Coord A exon
chr1:35415715-35418442
Coord C2 exon
chr1:35418443-35418572
Length
2728 bp
Sequences
Splice sites
5' ss Seq
CAGGTACGG
5' ss Score
10.88
3' ss Seq
TTATTATTTCCTGTCTCAAGATA
3' ss Score
6.87
Exon sequences
Seq C1 exon
GTTACATGTTCTCTCGCATTGAGGAAGAGCATTTGTGGGAGTGCAAACAGCTGGGCGCTTACTCACCAATCGTCCTTTTAAACACCCTCCTTTTCTTCAATACCAAATACTTCCAACTAAAGAATGTTACTGAGCACTTGAAGCTTTCCTTTGCCCATGTGATGAGACGGACCAGGACTCTGAAGTACAGTACCAAGATGACATATCTGAGGTTCTTCCCACCTTTACAGAAGCAGGAGTCAGAACCAG
Seq A exon
GTACGGGATACTGTTTGTCAGATTTCTCTTTGAAGTCTTAGTAGTAGTACTAAAATAGAGAGTTACTGCAGAAAGGTAATTATAAATGCTAGACGTGAAAGAGTGTACCTTTAACATTTGAATATTTTTCTCTATTGTCAGAGAGTGGTCAAAGGCTGGCCTCAAAGTGAGAGGAATCACGTGCTTCAATATACTTTCATTGGCTTTTAAATTAGAAATTTTGATTTAATTGGGCAGAGCTCAAATAGCCTGCATTTTAAAACTTCTCAGGAAATTAAAAAATACAAACAGGGTTGAGAATCACTAATTTACTAGCCCCAGATGAGTCAATCACTAGTTAAACGAAACCTGCAGAACTTTTAGTCCATTGTTTCTAAATCTTTTTTTGACCAGAGCCCCTCTTTTTAGTTAACATTGTGAAATTCTGAAGGAACTTAAAAGCTGACCTACAATATACTGCTTTTGTACACAATAGAATAATAGCAGTGACAATTTTATTAGAAGGTTTATTGTCTTGCATTTCAAAAACAGCCTATTAAATAAGTTTGTTTTTAATGTTCAGAAACTTAATCTTGGTATTATAGGATTAGAAATTAAATTTATTATTTTTTGAATAGAATCATAAGTCCTGAACTTCCCAAAATCAGTTTCTGAGAGTGAAATACATTTTTTGAATGTGAGAATTTAAATCACTGAAACTAAAATCTGTATTTGTGATGTTCAACTTTGTATAAACTTTTTTCTGAATTGTTCATTTACTAAGATTATCTTTTTCACCTAATGTCTGTGTCCTGTTTGCTTAGTTTTATATATATGTAACCCACTTTGTGCTCTCAATTGATTTTTATTTATTTATTTATTTATTTTGAGATGAAGTCTCACTCTGTCACCCAGGTTGGAGTGCAGTGGTGTGATCTCAGCTCACTGCAGACTTCGCCTCCCAGGTTCAAGCAATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGACTACAGGCATGTGCTACCACGCCTGGCTAATTTTTGTATTTTTAATAGAGACGGGGTTTCACCATATTGGGCAAGCTGGTCTCGAACTCCTGACCTCAGGTGATCCACCCGCCTCGGCCTCTCAAAGTGCTGGGATTACAGGCGTGAGCCACCATGCCTGGCCTCAGTTGGTATTAACTGGGGGAGGGAAAGGCAGGTGGATAATGTTTCCCTGTTTGCTGATTGGGTGCTTGACATGATTAGTAGTGAATTCAGCTTGCTTTCTAAGTGAGTAACTAGCAAAGTCTTTCTATTTAGCTAGCTGCTAAATGGAAAATGGGTGAGTTTTGTTAAAGTAATAATGCAGGAAGCTGGGGAAAGTCCTATACCGGTTGTTAAGAGCAGATATAGGCTGAGTGCAATGGCTCATGCTTGTAATCCCAATATTTTGGGAGGCTCATGCGGGAGGATTGCTTGACCCCAGGAGTTTGAGGCTGTAGTGAGCTGTGATGGAGTCACTGCACTCTAGCCTGGGCAACAGAGTGAGACCCTGTCTCCCAAAAAAAAAAAAAAAAGAAAGAAAACCTTTTTTCCTTAGGTCCATCTAGTGTTCTCTTGAGGAGTGAATGGAAAAAGTGGGAAAGAAATAGCCCACTTTCCGTATCTTCACCCTGACTTCCTTATATAATGCTTGGCCTCTGCAAAATACTGTTGGGGAAAAATGGTTTGTTCTTTTCTTACCAAATAGTAACTCTGCTGATAATTTCTCTTCCCAACAAAGATGCCATTTCTCACAATATTCGAACAAATAAACTTGAGCAGATGCCCAGTACTAGTGCCCCACAGTAGAAATATTCTCATAGAGATGACAGCTTCTGCTGAGTTCAGTGGCTTGTACCTGTAGTCCCAGCTACTCCAAAGGCTGTGGCAAGAGGATCACTTGAACCCAGGAGTTCAAGGCTGCGGAGATTCAAGGCTGCTGTGATCACACCATCATGCTCCAGGCTGGGCAACAGAGTGAGACCCTGTCTCTTAAAAGAGAGATGGCGACCGGGCACGGTGGTTCATGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGTGGGCTGATCACCTGAGGTCAGGAGTTCGAGACCAGACTGGCCAACATGGTGAAAACCTGTCTCTACTAAAAATACAAAAAAATTAGCTGGGCATGGTGGCAGGCGCCTGTAATCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATCCTTGAACCTGGGTGGAGGCTGCAGTGAGCGGAGATTTCGCCGTTGCACTCCGTCCTGGGCAAGAAGAGCAAAGTTCCGTCTCAAAAAAAAAAAAAGAGATGGCAACTTCTGTCTTGATCTCTACTGTAGGAGAAAAACATGTGGAACCCTTCTTTCTGCTTTATCTTGATATGTCTCAGGAACCCTGTGCCTAATGAAGTTTATTAATAAAGTCAGGCTCAGAATAGAGACGTTTTCCAGTGCCAGTGCCATACTTTTTGTCATGGTGCCCCCACTTTGGTGAGCAGGGGAGCATAAAATTCATGGGATAGGGACTTTGTTTAATGCCATAGAATCCAGCACTTAAAATAATGTCTGGCACCTTCATAGGCACTCAGTATTTGTTGAATGAGTGTGAGTGAGTGAAAGGGAGGAAATGACAAAGTTCTGGCTGCGAAGCAAAGCTCATTGGTGTCTTGAGACTCAAAGAATAGACTTTTCTAATATAATCCTTTGATTATTATTTCCTGTCTCAAG
Seq C2 exon
ATAAACTGACTGTTGGCAAGAGGAAACGAAATGAAGATGATGAGGTTCCAGTGGGGGTGGAGATGGCAGAGAATACTGACAATCCACTAAGATGCCCAGTCCGACTTTATGAGTTTTACCTGTCAAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000146463:ENST00000314607:28
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.018 A=NA C2=0.489
Domain overlap (PFAM):
C1:
PF120123=DUF3504=PU(47.7=98.8)
A:
NA
C2:
PF120123=DUF3504=FE(24.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains