RnoINT0169176 @ rn6
Intron Retention
Gene
ENSRNOG00000012397 | Zmym4
Description
zinc finger MYM-type containing 4 [Source:RGD Symbol;Acc:1309545]
Coordinates
chr5:144881531-144884615:-
Coord C1 exon
chr5:144884364-144884615
Coord A exon
chr5:144881661-144884363
Coord C2 exon
chr5:144881531-144881660
Length
2703 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
3' ss Seq
GATTTTTTTCCTGTCTCAAGATA
3' ss Score
6.43
Exon sequences
Seq C1 exon
GTTACATGTTCTCCCGCATCGAAGAAGAGCACCTGTGGGAGTGTAAGCAGCTGGGTGCCTACTCGCCCATTGTCCTGTTGAACACCCTCCTGTTTTTCAATACCAAATACTTCCAACTGAAGAATGTCACCGAGCACTTGAAGCTCTCCTTTGCCCACGTGATGAGGCGGACCAGGACTCTGAAGTACAGTACCAAGATGACGTACCTGAGGTTCTTCCCGCCGCCGCCACAGAAGCAAGAGTCGGAGCCAG
Seq A exon
GTGTGTGCTTGGAGTGCTGATGCGGCCGTCACTGAAGGTCATGGACGGCATGCGGAAACTTGCTTTTTTTTTTTTTTAAAGATTTATTTATTTATTATATATAAGTCCACTGTAGCTGTCTTCAGACACACCAGAAGAGGGCGTCGGATTTCATTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCAGGACCTCTGGAAGAGCAGTCAGTGCTCTTAACCGCTGAGCCATTTCTCCAGCCCCGAAATTTGCTTTTAACACTTGAATGTTTTTCTGTTTCTGAGTATGTACAAGTTCTCAAAATGAGAGGACTCTTGGTTTGTTGTAATTTTATTAACTTAAGTTAGAAATGCTGACTTAATTGTGTAGTGCCCCCTAATTTAGTTGGGTAGATCACAAATAGTCAACATTTAAAACTTACCAAGGTGTTTAAATCTGTAACCATGGCGATGAGGTCACCGCTTCCAGGTGCCAGTCAGCAGTTAACAGTTAAAAGAACATGCCTGGCTTTTAATCTGGTGGGCTCTTTGTTTTTGACCTCTCGCTTTAGTTAGCATCTTTTAGTCAGTTCTCAAGTTCTAAAGAACCCAGAAGCTGGCCTAAAGCAGGCTGCTGCTGCGGCTTCACTAAGTGGATCGAGATCATGCGTTTCAGAAACAGACTAAGTGACTCTGTGTCTTCAACGTCTGAAAAATACTGCTATCGTAGAACTAAAATTAAACTTTTGGTCCGTGTTTGGTTCTGGTCTTTTTAGGCCTTGCCTTAGTATATAGTAGCTCAGGCTATCCTTGACCTCATAACCCTCTTAAATCAGCCTTCCTGAGAGTTGCAATTACAGCTCTATGCCGTCATGTACATACAGCATATGTACACACGAGAAGTTCTTAATTTACACCAATATTCCGTTCTCCCTGTTGGATAATTACTTTAAGAATAAATTACATACTCAAAATGTGAAGACTTAAATTTTCTGAATCTAAACCCTGTGAGCAGTTGTCACGTTGTCCTGTACATATTAGCTTGTTTGCAGTTGCTCCTTTAGCTGGGGAAACACAGCTGCCTCACCCTGTCCCCCGGTGTCTGTGTCTGGCCGTTGCATAGTGCTTATGTCATCCACTTTGTAGTTTTGTTTTGGTTCTTGCTTTTTGAGACATCTCACTTTGTATCCGAGGCTGGCCTAAACTCAGCTGTATTTCCTAAAGTGGCCTCAGAGTTGTGAAGCCACACATCCCTCTCGGCTTCCTGTGGGCTGGGGTTGCAGGCCTGGTTCTCCTCCTGAAGGTCTGCTTTGTCTCTTAGGTAATATTAGCGAAGGAGGGAGAGGCAGTTGGTTATTTCCACTTTTGATTGAGTACTTGACAATGTTGATAATAAGTTCAACTTGTCTTTAAAGTAACTTGCATGTTACTTTCTGTGTCGGAAGCTGGAGTGAGTTGTCTTAGAGCAATAATGCTCATAGCTGGAGAGAGAGCCCTAAGCCATTTGTTGGGAGTAACTGTAAAAATGGGCCTGGAAGGGCCTGGAGGGCTCGGGTTAGAGCACTGGGCCGTCTCTGTTCTACTCCCAGCACCCACGGGGCAGCTTAACAACAGCTGCTTGGGCCTCTGCTTCCAGAGGGAACTGGTGCCTTCTTCTGGCCTCTGGGCACTGCATGAAGCTGGTGCACAGACATACATGCAAACAAAACACCCCACACACAAATATAAACAGAAACATCTTTTAAAAAAATGGGTTGGGGCTCTGGCTCAGTGGATAAAAGTATTTACCGTGCAAGCACGAGAACCTGGATTAGGATCCCCAGCTCCCTTTGAAACCCGCAGTGATGATGCACATGTCTTACCTCAGTACTGAAGGGCTGAGGCAGGTGGATAGCTAAAGGCTTGCTGGCCGGCCAGTGTAGCCTCTAACTAAACTGCAGGATAGTGAGAGGGAGAACCTGCCTCAAGAAGAAAATGGAGGGGCAACACGATGGCTCAGCAGGTGACAGTGGTTGTTTCTTAGCCCCGATGACCTAAGTCGATCCCTGGAACCCATGTAAAGCCAGAAGGAGGGAGTTGGTGCTACAGAGTTATTTTCTGACTCCACGTGTGTACACAGTGCTTAGATTGAATGATGCACGCTCGCGTCTTGGGATCTTACATCCTCACAGCAGAGTTCGGTTTAGATTGCTGAATGTAGAGGTGAGAAACAGCAGCCTCCTTCTGGTGCCTGCCTGTGTGGTCTGACAGCCTAGCCCTGTAGAGTCCTGTCCCAGCAAATGAAAACTCTGATCCGTTTCTTAGAATCCACAAGTCAGGGGGACTAGAGCGAGAACACAGTCTGTGCTAGTGCTCTGAGGAGAGATCCATATAGGTTCATGTAGATCCTTATAGATCCATATAGATCCATGTAGATGCTTCCGTTTATGAGCCCTGTCCCTGATCCAGTCTCCTGAGAAAGCCAAACTCCAGATGAGAACATTCCCCAGCCTAGTCACTTTTGTCACAAGGCTTCTTCTTTGTTTAAGAGAACATACATGTTACAGGACAGGCCTAGTGATTAGCATGTAAACAAAACACTTGGCACATAGTTGCTTAACAAATATTGTTGGATAAATGGAAGAGCAGGAGTTACAGTCTGGATGTGAAGCAGAGATTGATTATGAGGTATGTTGGCACTTATACAAATCTTTGATTTTTTTCCTGTCTCAAG
Seq C2 exon
ATAAACTAACTATTGGCAAGAGGAAACGAAATGAAGATGAGGAGGCTCCAGTGGGTGTGGAGATGGCAGAGAACACGGACAATCCACTGAGGTGCCCTGTCCGGCTTTACGAGTTTTACCTGTCTAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012397:ENSRNOT00000016992:28
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.059 A=NA C2=0.545
Domain overlap (PFAM):
C1:
PF120123=DUF3504=PU(48.0=98.8)
A:
NA
C2:
PF120123=DUF3504=FE(24.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]