HsaINT0186282 @ hg38
Intron Retention
Gene
ENSG00000170949 | ZNF160
Description
zinc finger protein 160 [Source:HGNC Symbol;Acc:HGNC:12948]
Coordinates
chr19:53074140-53075183:-
Coord C1 exon
chr19:53075057-53075183
Coord A exon
chr19:53074269-53075056
Coord C2 exon
chr19:53074140-53074268
Length
788 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGG
5' ss Score
6.74
3' ss Seq
TCCTTTCTTTTTATAAACAGGAC
3' ss Score
10.57
Exon sequences
Seq C1 exon
GTACGGTTGACATTTAGGGATGTGGCCATAGAATTCTCTCAGGAGGAGTGGAAATGCCTGGACCCTGCTCAGAGGATCTTATACAGGGACGTGATGTTGGAGAACTACTGGAACCTTGTTTCTCTGG
Seq A exon
GTGAGGATGACTTTCTTCCAGAAGTCAAGATCTGTTCTTGTCTATTGTTGCATTTTCCCTTACGAGTCCCTGGAGAGCCCCTGCATTGCTTGACTGAGATTGAAGTCCTGTTGACTCTGAAATGGAAAGCTTAATCATGGGAAACCTGGACTTTAATCTTCCCCTTTCTCAGATGTTCTGCCTCCTTTGTACTTCATCATTTGAGGTTTCAGAGCTTTTGTATGCATAATACATTGTGTTAGACTTTTGAAATGTCAGATTTCCTGTTTTCTACCTCTCTGCTTTGGATTAAGTTGTTGGTGGAATAGAGCCTTCTATCAGCATGTACCATGTTTCCTGGGTATTCAGAAGGAGGCATTCAGTGGATGATTTTTTTTTTTTTTTTTTGAGGCGGAGTCTCGCTCTGTCGCCCGGGCTGGAGTGCAGTGGCGTGATCTAGGCTCCCTGCAAGCTCTGCCTCCCAGGTTCATGCCATTCTCCTGCCTTAGCCTCCCGAGTAGCTGGGACCACAGGCGCCCGCCACCACACCTGGATAATTTTTTTTTATGTTTTTAGTAGAGACAGGGTTTCACCATGTTAGCCATCATGATCTCCATCTCCTGACCTTGTGATCCACCCACCTCAGCTTCCCAAAATGCTGGGATTACAGGCATGAGCCACCGCGCCTGGCCCAGTGGATGAATTTTTGAAGTTTTCTTAGATCCACATATAATGTCCTCTCATGTAAACATAGGGCTGGGATTCTGGAAAAGCCCCGGCACATTGTGATCCTTTCTTTTTATAAACAG
Seq C2 exon
GACTGTGTCATTTTGATATGAATATTATCTCCATGTTGGAGGAAGGGAAAGAGCCCTGGACTGTGAAGAGCTGTGTGAAAATAGCAAGAAAACCAAGAACGCCGGAATGTGTCAAAGGCGTGGTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000170949:ENST00000599056:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.009 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGGTTGACATTTAGGGATGTGG
R:
CTGTGACCACGCCTTTGACAC
Band lengths:
254-1042
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains