HsaINT0186285 @ hg38
Intron Retention
Gene
ENSG00000197279 | ZNF165
Description
zinc finger protein 165 [Source:HGNC Symbol;Acc:HGNC:12953]
Coordinates
chr6:28085481-28086310:+
Coord C1 exon
chr6:28085481-28085891
Coord A exon
chr6:28085892-28086171
Coord C2 exon
chr6:28086172-28086310
Length
280 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCAC
5' ss Score
4.29
3' ss Seq
ATGTACTTTATTTTTCTCAGGTT
3' ss Score
8.44
Exon sequences
Seq C1 exon
ATGGCTACAGAACCAAAGAAAGCTGCAGCCCAGAACTCTCCAGAGGATGAAGGACTTCTGATAGTGAAGATAGAAGAGGAAGAATTTATCCATGGGCAGGACACTTGCTTACAGAGAAGTGAACTCCTTAAGCAGGAGCTCTGCAGGCAGCTTTTTAGGCAGTTCTGCTACCAGGATTCTCCTGGACCTCGCGAGGCACTGAGCCGCCTCCGGGAGCTCTGCTGTCAGTGGCTGAAGCCAGAGATCCATACCAAGGAACAGATTCTGGAACTGCTGGTGCTAGAGCAGTTCCTGACCATCCTGCCAGGAGATTTGCAGGCCTGGGTACATGAACATTACCCAGAGAGTGGAGAGGAGGCAGTGACCATACTAGAAGATTTGGAGAGAGGCACTGATGAAGCAGTACTCCAG
Seq A exon
GTGCACAGGGGATGGGAGATCTAAGACCTCCATAATGGATAAAGTTCCACGGTGGGAGGAGAGGCCCGAGATTGCATATCTAGCTTGCAGGAGCTGTTGGTTCAGTGTGCATTTATGTCTCCTTTCCTGTCTGTTTGATTCCACACTACATTTTACAATTAAATCAGACTCGATTCTTCCTTCCCCAGTTTTGCATTTCTATGGGAGTTTCTCTTTGTTGTTAGAAGACGTTTAACACAGGGATTCTTTTATAAGCCCAAATGTACTTTATTTTTCTCAG
Seq C2 exon
GTTCAAGCCCATGAACATGGACAAGAAATATTCCAGAAAAAAGTGTCACCTCCTGGACCAGCACTTAATGTCAAGTTACAGCCAGTGGAGACCAAGGCCCATTTTGATTCATCAGAACCCCAGCTCCTATGGGACTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197279:ENST00000377325:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.153 A=NA C2=0.426
Domain overlap (PFAM):
C1:
PF0202312=SCAN=PU(97.9=68.6)
A:
NA
C2:
PF0202312=SCAN=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTGCTGTCAGTGGCTGAAG
R:
AAAATGGGCCTTGGTCTCCAC
Band lengths:
300-580
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains