MmuINT0178708 @ mm9
Intron Retention
Gene
ENSMUSG00000051469 | Zfp191
Description
zinc finger protein 191 [Source:MGI Symbol;Acc:MGI:1929704]
Coordinates
chr18:24175785-24176669:-
Coord C1 exon
chr18:24176169-24176669
Coord A exon
chr18:24175933-24176168
Coord C2 exon
chr18:24175785-24175932
Length
236 bp
Sequences
Splice sites
5' ss Seq
CCGGTGAGC
5' ss Score
8.69
3' ss Seq
AACTGAACTCTTGTTTTCAGGTT
3' ss Score
7.96
Exon sequences
Seq C1 exon
GAGTACTTTTGAGGAAAACAGGGTATTTCTCTGAGGTGTATACCTTGCCTCCATTGCCTTTTCTTGAAGTACTGTAACAGAATGTCTGCACAGTCAGTGGAAGAAGATTCAATACTTATCATCCCAAATCCAGATGAAGAAGAAAAAATTCTGAGAGTGAAACTAGAGGAGGATCCTGATGGTGAAGAGGGATCGAGCATTTCCTGGAACCATCTCCCTGACCCGGAGGTTTTCCGGCAGCGCTTCAGGCAATTTGGATACCAGGATTCACCAGGACCTCGAGAGGCGGTGAGCCAGCTCCGAGAACTTTGCCGCCTGTGGCTCAGACCAGAGACACACACAAAGGAGCAGATACTGGAGCTGGTAGTTTTGGAGCAGTTTGTTGCCATCCTACCCAAGGAGCTACAGACTTGGGTTCGAGAGCATCACCCAGAGAATGGAGAGGAGGCAGTGGCTGTTCTAGAGGACTTGGAGAGTGAGCTTGATGACCCTGGTCAGCCG
Seq A exon
GTGAGCATGCTTGCCTTATTTTCCCAGGTGGAAATACTCATACAGCAGTAGGCACACTGCTGAGTTAACTTCACTTGGCTAAGTTAGAAGCATGTTTATACCTCCTTCCAGTTCCCTTGCAACTTTGCAATACCTGGCTGCTCTGCTAGCTAGGATTCTCGTGTCTCTGTATAGTTTCTGTTATGTGTGCTTAGTGTCAGAATGTCTTCTCAACCAAACTGAACTCTTGTTTTCAG
Seq C2 exon
GTTTCTCTCCGTCGGCAGAAACGGGAAGTGCTTGTAGAAGAGATAACATCTCAAGAAGATGCTCAGGGATTACCGAGTTCTGAGCTGGATGCTGTAGAGAACCAGCTCAAGTGGGCATCCTGGGAACTCCACTCTCTGAGGCACTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000051469-Zfp191:NM_021559:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.414 A=NA C2=0.480
Domain overlap (PFAM):
C1:
PF0202312=SCAN=PU(97.9=67.1)
A:
NA
C2:
PF0202312=SCAN=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAGCAGATACTGGAGCTGG
R:
CAGTGCCTCAGAGAGTGGAGT
Band lengths:
304-540
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: