RnoINT0167902 @ rn6
Intron Retention
Gene
ENSRNOG00000016562 | Zfp24
Description
zinc finger protein 24 [Source:RGD Symbol;Acc:727963]
Coordinates
chr18:15918244-15919120:-
Coord C1 exon
chr18:15918621-15919120
Coord A exon
chr18:15918392-15918620
Coord C2 exon
chr18:15918244-15918391
Length
229 bp
Sequences
Splice sites
5' ss Seq
CCGGTGAGC
5' ss Score
8.69
3' ss Seq
AACTCAAATCTTGTTTTCAGGTT
3' ss Score
8.16
Exon sequences
Seq C1 exon
GAGTACTTTTGAGGAAAACAGGGTATTTCTGAGGTCTGTACCTTGCCTCAGTTGCCTTTTCTTGGAGGTATTGTAACAGGATGTCTGCCCAGTCAGTGGAAGAAGATTCAATACTTATCATCCCAAATCCAGATGAAGAAGAAAAAATTCTGAGAGTGAAACTAGAGGAGGATCCTGACGGTGAAGAAGGATCGAGCATTTCCTGGAACCATCTCCCTGACCCGGAGATTTTCCGGCAGCGGTTCAGGCAGTTTGGATACCAGGATTCACCAGGACCGCGAGAGGCGGTGAGCCAGCTCCGAGAACTGTGCCGCCTGTGGCTCAGACCGGAGACGCACACGAAGGAGCAGATACTGGAGCTGGTGGTTTTGGAGCAGTTTGTCGCCATCCTCCCCAGGGAGCTACAGACTTTGGTTCGAGAGCATCACCCAGAGAACGGAGAGGAGGCAGTGACTGTTCTAGAGGACTTGGAGAGTGAACTTGATGACCCTGGACAGCCG
Seq A exon
GTGAGCATGCTTGACTCATTTCCCCAAGGCAGGACACTAACATAGCAGTAGGCAAACTGCTGGATTAACTGCACTTGGCTAAGTTATATCTGTACCTCCCTCCAGTGTCCTTGCAACTCGGCAGGACCTCCGCTGTGCTGCTAGCTAGGATTCTCATGTCTTCTGTATGTTCTGTTATACTGCTTAGTGTCAGAGTCCCTTCTCAACCAAACTCAAATCTTGTTTTCAG
Seq C2 exon
GTTTCTCTCCGTCGGCGGAAACGGGAAGTACTTGTAGAAGAGATAGCATCTCAAGAAGACGCTCAGGGATTACCGAGTTCTGAGCTTGACGCCGTAGAGAACCAGCTCAAGTGGGCATCCTGGGAACTCCACTCTCTGAGGCACTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016562:ENSRNOT00000022304:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.379 A=NA C2=0.170
Domain overlap (PFAM):
C1:
PF0202312=SCAN=PU(97.9=67.1)
A:
NA
C2:
PF0202312=SCAN=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGGTTCAGGCAGTTTGGATA
R:
ACAAGTACTTCCCGTTTCCGC
Band lengths:
297-526
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]