HsaINT0186575 @ hg38
Intron Retention
Gene
ENSG00000172466 | ZNF24
Description
zinc finger protein 24 [Source:HGNC Symbol;Acc:HGNC:13032]
Coordinates
chr18:35339829-35340733:-
Coord C1 exon
chr18:35340231-35340733
Coord A exon
chr18:35339977-35340230
Coord C2 exon
chr18:35339829-35339976
Length
254 bp
Sequences
Splice sites
5' ss Seq
CCGGTGAGC
5' ss Score
8.69
3' ss Seq
TCAAATCTTTCTGTTTCCAGGTT
3' ss Score
10
Exon sequences
Seq C1 exon
GAGTGCCTGTGAAGAAAACGGGGTATTGCCCTGAGGCTTATATTCTGCCTCAGTTGTCTTTTCTTGAAATATTATAAATCAGAATGTCTGCACAGTCAGTGGAAGAAGATTCAATACTTATCATCCCAACTCCAGATGAAGAGGAAAAAATTCTGAGAGTGAAGTTGGAGGAGGATCCTGATGGCGAAGAGGGATCAAGTATCCCCTGGAACCATCTCCCAGACCCAGAGATTTTCCGACAGCGATTCAGGCAGTTTGGATACCAGGATTCACCTGGGCCCCGTGAGGCTGTGAGCCAGCTCCGAGAACTTTGCCGTCTGTGGCTCAGGCCAGAGACGCACACAAAAGAACAAATCTTGGAGCTGGTAGTGCTGGAGCAGTTTGTTGCCATCCTACCCAAAGAGCTACAGACTTGGGTTCGAGATCATCATCCAGAGAATGGAGAGGAGGCAGTGACAGTGCTGGAGGATTTGGAGAGTGAACTTGATGACCCTGGACAACCG
Seq A exon
GTGAGCCTGCTTGTGTCATTTCCTGTGTCAGAAGCACTGGCATAGGTAGTAGGCAAAGCTGCTGAATTAATTCCACTCAACTAAGTTAGAATTATGTTTATGCCTTTTCCCCCATTCCCCTACCACTCCTTGTTATCTGTGCCGCTTTGCCATCTAGGCTTCTGCAGTATTTGTTTCATGGGGTTTCTCTTACGTGTTTTTAGTTCTGATTCTCATTACAGTTCCTTCTCTGAATCAAATCTTTCTGTTTCCAG
Seq C2 exon
GTTTCTCTCCGTCGACGAAAACGGGAAGTACTAGTAGAAGACATGGTATCTCAAGAAGAAGCTCAGGGATTACCAAGTTCTGAGCTTGATGCTGTGGAGAACCAGCTCAAGTGGGCATCCTGGGAGCTCCATTCCCTAAGGCACTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000172466:ENST00000261332:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.407 A=NA C2=0.295
Domain overlap (PFAM):
C1:
PF0202312=SCAN=PU(97.9=67.1)
A:
NA
C2:
PF0202312=SCAN=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCGAGAACTTTGCCGTCTG
R:
TGGTTCTCCACAGCATCAAGC
Band lengths:
308-562
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains