HsaINT0186530 @ hg19
Intron Retention
Gene
ENSG00000159915 | ZNF233
Description
zinc finger protein 233 [Source:HGNC Symbol;Acc:30946]
Coordinates
chr19:44771019-44779468:+
Coord C1 exon
chr19:44771019-44771114
Coord A exon
chr19:44771115-44777051
Coord C2 exon
chr19:44777052-44779468
Length
5937 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
AGTTCTCTTTATCATTCTAGGAC
3' ss Score
9.12
Exon sequences
Seq C1 exon
GCTATCAACCCTTCAAACTAGATGTGATATTACAGTTGGGAAAAGAAGACAAGCTTCGGATGATGGAGACAGAAATCCAAGGAGATGGGTGTTCAG
Seq A exon
GTGAGAACCATGGAGCTCTGAGTCTTTGCGGGGTACAGCCTAGTCCTCTCCTCCTCACCACCTCCTCAGCCACCAGCCTGGCCCAAGACCCCAGAATTCATCGCCCTGGTTTACTGCAGCAGCTTGCACATGACCTTCCTCCTTCTACCTCCCTCCAGTCCATTCTCCACATAGCCAGATCATGTAAGTCAGATCATGTCGCTCCTTGGCTCAAAAGCCTTCTGTGACTTCCCATCTCACTCATTAATTCCAAAATCTCTACGAGCCTTCAGGGTCCTATGTGACCTGGTCACCCACTCCCTGTGAATTGATTTCCTATCCTTTGCTTTTCACTCAGTTCTTTCCAGCCACACAAGACTGCTGTGTGTTTCTTATACATGCCAAGGGTGCTTTTTTTTTTTTTTTTTCTTTAAGACAGGTCTCACTCTGTGACCTAGGCTGAAGTGGTGGTGCAATCATGGTACACTGCAGCCTCGACCTCCCAGGCTCAATCGATCTTCTCACCTCAGCCTCCTGAGTAGCTGGGATGGGACTACAGGCACTTGCCACTATGCTGGACTAATTTTAAAACTATGTATATATACATGTTTTTTTTTTTTTGGTAGAGATGAGGTCTCACCATATTACCCAGGTTGGTCTCAAACTCCTGAGCTCAAGCAATCCTCCCACTTCAGCCTCCCAAAGTGTTAGGATTACAGGCATGAGCCACTGTGCCCGGCATACATGTATTTCTTTCTACCTGAAGCCTTTTGCTCTTCTGTCTGCCTGGGATGTTCTTACCTCATACATCCTCTTGGCTCCCAGCCTACTTCCTTTATGTCTGGTCAGATGTCATCTCATCACAGAAACCTGCTTTTTTTTTTCTTTTAGACGGAGTCTTGCTCTGTCGCCAGGCTGGAGTGCTATGGCGCGATCTTGGCTCACTGCAACCTCTGACTCCCTGGAAAACTGCTTTGACTACCCTGTTTAAAATACCTATCCTTGGCTGGGCGTGATGGCTCATCCCTGTAATCTCAGCACTTTGAGAGGCCAAGGTGGCAGGATCACTCGAGGCCAGGAGTTTAAGACCAGCCTGGACAACACAGTGAGACCGCACCTCTATAAAAAAATTTAAAAAATTAGCTCACAGCTATAACTGTGCCACTGCACTGTAGCCTGGGCGACAGAGCAAGACCCTGTCTCAAAAATACATACATACATACATACATACATACATACATACATTTAATTAAATTAAATACCCATCTCTTTATTCTGCCTTTGTGATTAATCATCAATCATCAGCTGACATATTCATGTATTACATTTTGTTTACTTTTCTATGGTCTCTTTCCCCATTAGAGTACAACTTCATGAACGTAAGAATTTTACCTGTTTTCTTTTCATTTTTCTTTTTCTTTTCTTAGAGATGGGGGTCTGGCTTTTTCACCTAGGCTGGAGTGCAGTGATACAATCATAGCTTGCTGCAGCTCAAACTCCTGGGCTGGGACTACAGGAGTGCACTACTGTGCCCAACACTAATATTACCTGTTTTAAAATTGCTGATCCTTATTGCCTTTAATAGGCTTGGCACGTAATACCTGTTCATTTAATATTTGTCGAATGAGTGACTGAATGAGTGAATGAATGGGTTAATGGACCGATGTCAGTAACGTCAGTTAATGGACTAATGGATAGGTGTTTTCATTTGAATAGTACTGTAATGGCTCCCTCACAGATCTCCCAACCTGTGGTATCTGCGAGACTTTTGGTGAGAGTTGCCTCATCCATACACCCAGTGACAACCTCCCTGTTCTGCTTTCACCCCTCTCCTTCTATTCTTTCTCTTCCTTATTTCATTCCCCCTTTTCTTCACTTCTTCCTTCATTTATCTTTAATTTGAATATACATCATAAATACCTAAAATACACTAATTAAAGTCATTCCTACTTGATAGAAGCACCAAAACGCAAAAACTAAATTAAACAAACAAAAAAAGCAAACCAAAAGCCCAGGAGAATCTCTCTGCTTATCTGAGAGAGACAGGCCCTGGATTTTGTAAGTAGCTGGAGTAGTAAAATCTTTCCAATCTTCTTATCTTTTATTTTCTTGTATCTCCATGCTCCATGAACGTTGACTGCATTGCAATCAGGAATGTTGGATGCTGACTTCTTTGACTGACTGCCTCATTTTTAAAAATTTTCTTTTTTTGTTTTTGACTGCCTCATTTTTGTGTATAAACCTAAAACTTGGGAATTATGATCCCAGTTATTGCCATTGTCCTTTTTTTTTTTCTTAACAGGTAGCTTCTTCCCAACTTCTTCTTTGCCTCCTTAGCAAATCTTGACTGTTTTTGTTTTTTTTTTCTTTTTTTGAGATGGAGTCTCGCTCTGTTGCCAGGCTAGAGTGCAGTGGCGCAATCTTGGCTGGCTGCAACCTCTGCCTCTCAGGTTCAAGCGATTCTCCTGCCTCAGCCTCCCGAGTAGCAGGGACTATAGGCGCATGCCACCACACCCAGCTAATTTTTGTATTTTTAGTAGAGATGGGGTTTCACCATGTTGGCCAGGATGGTCTCTATCTCTTGACCTTGTGATCTGCCCACGTTGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACTGCTCCCGGCCACAAATCTTTACTTTTTTTTTAATTTTTGGCCAATTTTTTATTGAAATATATACAGAAAACTGTACAAATTGTAAATGTATAGCTCCCTAAATTTTCAGGAAGTAAAATGGCTTGTTTTACAGCTCTTTTTTATTGAGGTAAAATTTACATGTGCACACCTTAAGTGTGCAATTTGATGAGTTTTGACAAAAGGATATAACTATGTAACTCACAGCCCTTGGAAAACTGAACAAATCTGACAGCGTATTCTACCCTCACCTCTCTTTATTTTTTGGCAAACATCAGAATTTTTTAGGGTTTCACATTCTGCTTATCCACCTACGTACCCAGCTCCACCTATACAAAATATTCCTGAGGTCTATTTTCACTGGACAGAAGTACAAATTAAAGGGCATCTTCTCCCTCAAGGATCAATGAAACAAAATCTCACAGAGTATGGTGCTAAGTGGATCTCACTGTCTTCACTTCTCATTGAGAGAGTTCACAGGCAGAGAATAAAGAGGTGTCACTAAAGGACTATTTCAGAACATAGTTACTCTTCTGATGTTATGTTCAGCCTACTTATAATTTTTATGACACCTGTGTTAGTTATCAATTATTTTATAACAAATTACTGTGAAACTTAGCACCTTGGCCAGTTGTGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGCAGGCAGATCACCTGAGGTCAGGAGTTTGAGACCAGCCTGGCCAACATGGTGAAACCCCATCTATACTAAAAAAAAAAAAAAAAAAAAAAAAATTAGCCAGGTGTGGTGGCAGGCAACTGTAATCCCAACTACTGGGGAGGCTGAGGCAGGAGAATCACTTGAACCCCGGAGGCAGAGGTTGCAATGAGCTGATATCATACCATTGCACTCCAGCCTGGGGAACAAGAGCGGAACTTCGTCTCAAAACAAAACAAAAACCTTAGCACCTTAAAACAATGAACATTGGTTTATAGTTTCTATGGGTTAGGTATATGGGAGCAGCTTAGCTTAACCCTAAGTGAGGGTTCTCACTCCGGATCTCAAAAAGCTGTTAAAGAGTGACGGAGCTGCCGTCCCCGGAAGGCTGGACTGGGACTGAAGGACCTGCTTCCAAGGTGGGCTCGTTCACATGGCTGTGGCAGGAGGCCTCGCTTCCTTGCTAAGTGAACCATTCCCTACGGCTGCTGAAGTGTCCTCAAAACATGGCAGCTAGTTTCTCCCAGACCCAGTGATTCAGGAGAGTGGAAGATAGAAGCCACAGTGTTTTTATGACCTAGCATCAGAAGTGACAGATCATCACTTCTGCCATATTCTATTGGTTTCACAGACCAAACTTGATACAGTGTGGGAGGGGGCTTCAAAAGGGAATGGATTCCAATGGGGAGTGATCACTGGGGACCATCTTGTATTAGCCATTTAGGTTTATCAGAAAATTCAGTCAAACCAAGTGGCAACAATTATCAATGCCTTTACTCCTATAGGGTGTGTCAGCTATGGGAATAAGTTTTCTAATTCTTTTTCATTTATCATGTTCACTAATTGAATATTATATACTTAGAACCTCATTGAAAAGAAGGAGAATTCTCTCAAATCTAGCTCATCAAATGTATGTTTAAGGACTAAATTAAGGAAATAATGGTACTATCTTATGGGTTCATTCTCAAGACAGAGAAGATATTTTTCTATATTCTCTTCACTTTTGCCAAGGATGTCCCCTCTTTCTTTCTTTGAGAATTCTTGGCATCACTAAATAATCCACTTGTGAATGCTGAAGGAGAGATTCAGGCTTTTGTAACCATTTTTGGGCTTTATCATATACAGATGCAGGTTGTACAATGTAACCATGATTCTGAGGCTCACATATAGCCAGGATTTTGTAGATTTTATACATCTGCCACGGAAAAGAGGAGAGGATTTTTTTTTTTTTTTGAGACGGAGTCTCACTCTGTAGCCCAGGCTTGAGTGCAGTGGCACGATCTCCGCTCACTGCAAGCTCTGCCTCCTGGGTTCACACCATTCTCCTGCCTTGGCCTCCCGAGTAGCCGGGACTACAGGCGCCTGCCCCCATGCCTGGCTAATTTTTCTGTATTTTTAGTAGAGACGGGGTTTCACCATGTTAGCCAGGATGGTCTCGATCTCCTGACCTCGTGATCCACCTGCCTCGGCCTTCCAAAGTGCTAGGATTACAGGTGAGAGCCACCGCACCCAGCCAAAGAGGAGGGATTTTTAAGTGATTATTCTTATGGACAAGGAGGTAAAGTTTCTCCTCTACAACGTCTTTCTAGGGCATCTTTTTGTTGCTCTGTAGCCTGTGTATTTGACCACATACATAAGTCTTGGTATTGGCCAGGCATGGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCCAAGGCAGGCAGATGACTTGAGGTCAGGAGTTCAAGACCAGCCTGGCCAACATGGTGAAACCCTGTCTCTACTAAAAATACAAAAAAAATTAATGAGGTGTGGTGGCATGCACTTGTAGTCCCAGCTCCTCCAGAGGCTGAGGCAGGAGAATCACTTGAACCCCAGAGGTGGAGGTTTCAGTAAGCCAAGATCGTGCCACCACACTCCAGCCTGGGCAAGAGAGTGAGACTCCATCTCAAAAAAAAAAAAAAAATCCTCTCCTCTTTTCCATGGCAGATGTATAAAATCTACAAAATCCTGGCTATATGTGAGCCTCAGAATCATGGTTACATTGTACAACCTGCAGTCTCAAAAAAAAAAAAAAAAAAAAGTCTTGGTATAGCTCTAAATGAGTCTCATTAACATTTTGTATATAGAAGCCAGCCTTTTTTGTTGCCATAGGCATGAAAAAAACCAATGATAGTCTGGGTGCGGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGTTCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACATGGTGAAACCCCGTCTGTACTAAAAATACAAAAAAATGAGCTGGGCATGGTGGCAGGCGCCTGTAGTCCCAGCTACTCGGGAGGCCGAGGCAGGAGAATGGAATGAACCCGGGAGGTGGAGCTTGCAGTGAGCCAAGAGCACACCACTGCACTCCAGCCTGGGTGACAGAGCGAGACTCCGTCTCAAAAAACAAAAAAAGAGAAAAAAAAACAATGATAAAGTCAAGCTGAACTCTCCACTGGTTTATTAAGGTTTCCCAATGTGGTCAACCTGTGAAATGTTTTTTTATTTCTGAACAAATGTTCAGTTGTCTTCATTTTCATTTCTGAGTTCTCTTTATCATTCTAG
Seq C2 exon
GACACAAGAATCAAAATGAGATAGATACCCTTCAAGAAGTAAGATTAAGATTCCTTTCATATGAAGACCTTATATGCTGGCAAATATGGGAACAATTTACAAGTAAATTAACCAGTAATCAAGACCTAATAATAAATCTTCAAGGCAAGAGGTCCAAGTTGCTAAAACAAGGTGATTCCCCCTGTCAGGTGTGGACAGGAGAATCTAGTCAGGTCTCTGAAGATGAGAACTATGTAATAAAGCTACAAGGGGAGAGTTCAAATAGCATAAAAAATCAAGAGCTTCCATTGAGGACCACCTGGGATTTCTGGAGGAAAATGTATCTGAGAGAACCACAGAATTATCAGAGTAGGTGTCAGCAAATTGATGTAAAAAATAAGCTCTGTAAATGTGATCATTGTGTTAGGCAAAGAATTGCTCATCAACATGATGATCATGGAGTACACAAAAGAGAGAAAGCTTTTAGCCACAATAATTGTGGAAAAGACTGTGTGAAGGAATCATCCCAGCATAGCATAATCCAATCAGGAGAGCAAACCTCTGATGAAAATGGAAAAGGCTTAAGTGTTGGCTCTAATCTTGAACTTCACCAGCAACTACACTTAAGAGACAAGCCTCATGTAAATGTTGAGTACGGGAAGGGCATAGGTTACAGCTCAGGGCTTCCCAGGCATCAGTGTTTCCACATAGGAGAGAAATGCTATAGGAATGGTGACAGTGGTGAGGGCTTCAGTCAGGGCTCACATCTGCAACCTCATCAGAGAGTCAGCACAGGAGAGAACCTCTACAGATGTCAGGTATATGCCCGGAGCTCCAACCAGAACTCCTGTCTTCCCTCTCATGAGCTTACTCACCCAGGAGAGAAGTTGTGTACATGTGGCAGGTGTGGGAAGGGCTTCCATCATAGCTTAGATTTTGACATTCACTGTGTAGACAGTGCTGGAGAGAGAGCCTGTAAATGTGATGTATATGATAAAGGCTTCAGTCAGACATCACAACTTCAAGCCCATCAGAGAGGTCACTCTAGAGACAAGACATACAAATGGGAAGTAAGTGACAGGATATTTAATAGGAATTCTGGTCTTCACCAGAGAGTTCACACTGGAGAGAAACCATATAAATGTGAGGTATGTGATAAGGGCTTCAGTAAGGCCTCAAATCTTCAAGCCCATCAGAGAATCCACACTGGAGAGAAACCCTACAAATGTGATGTGTGTGATAAGAACTTCAGCCGTAATTCCCACCTTCAGGCCCATCAGAGAGTCCATACAGGAGAGAAACCCTACAAATGTGACACATGTGGGAAGGACTTCAGTCAGATCTCTCATCTTCAGGCCCATCAGAGAGTTCACAAAGGAGAGAAGCCATACAAATGTGAGACATGTGGGAAGGGCTTTAGTCAGAGTTCGCATCTCCAAGACCATCAGCAAGTCCATACTGGAGAGAATCCCTACAAATGTGATGTGTGTGGGAAAGGCTTCAGTTGGAGTTCACATCTTCAAGCCCATCAGAGAGTCCACACAGGAGAGAAACCATACAAATGTGAAGAATGTAGGAAAGGCTTCATCTGGAACTCATATCTTCATGTTCATCAGAGGATCCACACGGGAGAGAAACCCTATAAATGTGGCATGTGTGGTAAGAGCTTCAGTCAGACTTCACATCTTCAAGCCCATCAGAGAGTCCATACTGGAGAGAAACCATACAAATGTTTTGTGTGTGGTAAGGGCTTTAGTAAGAGTTCGTTGTCTTCAGATTCATCAGAGAGTCCATGATGGTGATGAATCTATTAATCATGATGAGTGTGATAGGGGTGCTCTTCAAGACTTAGACTTCCCATTTTCCTCAGAAAATCCACACAGCACAGAATATTTATAAAATGTCATGTTTTAAGAATTCATGAGCTGAGTTTTTATAGTTATCTGAATTCCATTGAAGAAAACCTATTTTTGTATGAATATGACCAGTTTCAAGCAGAGCCCAAAATGTCACAGTTGTCAAGAGAACACACAACAGAGAAACCCTATAAAGAATGATACAATATGTTTCAATCAGAACCTTCACATCCAATAAGCAATATGCAGGAGTGAAGCCTTCAAAATGATAAGTAAGGTCAGAATTTAGCAAAAGTATAATGAGGGACATGACAAAATCTGTGTCCACTAGAATCTAAGCTCCATGCAGGAACATTGTTTACTGCTGCATGATCGTGACCTTGAACAAGTACCTAAGAAATAGTGGCTTCCCTGGAATTGTTTAACTTGATAGGAAAAATCTATCATATATAGGACATATATTTGAATATTTTAGTGAGCTCAGCCCCAATTCGTCATTATAATTGTACTGGGAAAAGGATTCTTGCAAGAAGCCTTAAAATGAATTCAAGGAAATGACATTTAATTAAAACACATAAAACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000159915-ZNF233:NM_181756:4
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.333 A=NA C2=0.184
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=4.4)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)