HsaINT0186534 @ hg19
Intron Retention
Gene
ENSG00000159905 | ZNF234
Description
zinc finger protein 221 [Source:HGNC Symbol;Acc:13014]
Coordinates
chr19:44654566-44664462:+
Coord C1 exon
chr19:44654566-44654658
Coord A exon
chr19:44654659-44660404
Coord C2 exon
chr19:44660405-44664462
Length
5746 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
TGAATTCTCTGTCCTTACAGCAG
3' ss Score
8.95
Exon sequences
Seq C1 exon
GGCATCACCCCTTCAAACATGATGTATTCCTTTTAGAAAAGGAAAAAAAGCTTGATATAATGAAGACAGCAACTCAAAGAAAAGGGAAATCAG
Seq A exon
GTAAGAACCAAGCAGCTAAGAGTCCTTGTACGTGATTGTCCATCTGTTGTACTTCTCTCCCCTGCTCTTGCTGCCATCGGGTCCAAATTGCCAAACCTCTGTCCTGGATGATTGCAACAGCCTTCGTACTGGGCGCACTGCATCCACCCTCAATAGTATAAAGTATGTTCTCCTACAGGCGTTCTCCATATCATAGCTAAAGTGATCCTTTGGAAATGTAAGTCAGATTGCCATTCCTCTACTTAAGACCTTGTACAGGGCTGGGCACAGTGGCTCATGCCTGTAATCCAGCACTTTGGGGGCCAAAGCAGGAGGATCAGGAGTTTGAGACCAGCCTGGCTAACATGGCAAAACCTCGTCTCTACTAAAAATACAAAAATTAGCCAGGCGTGGTGGCCAGCGCCTGTAGTCCCAGCTACTCAGGAAGCTTAGACAGGAGAATCGCTTGAACCCAAGAGGCAGGTTGCAGTGAGCCAAGATCGCACCGCTACACTCCAGCCTGGGCAACAGAGCGACACTCCATCTTAAAAAAAAAAAAAATACTCTGAATGGCTTCTTATTTTTCTTAAAGTTGAAGTCTCTTAAAGGAGCTTATAGAGTCCTGCGTGGTCTGCTGTTCATCCTCCTCTGCGTCTCTGACTACATCTCCTGTATTCTACCTCTTGCTCCATCTTTTCCAGCCACATCATCCTCCCTGCTATTTCCCAGACCTGGTAAGGACATTGCTCGCTCTGTCGCCCAGGCTGGAGTATAGTGGTGCAATCTCAGCTCACTGCCACCTCCGCCTCCCAGGTTCAAGCGATTCTTCTGCCTCAGCCTCCCAAGTAGCTGGGATTACAGGTGCCTGTAACCACGTCCGGCGGATTTTTGTATTTTTTATAGAGACAGGGTTTCACCATGTTGGCCAGGCTGGTCTCCTGACCTCAAGTGACCCGCCTGCCTCAGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACTGTGCCCGACCTGGACACTGCATTTCTTACTGCTGCTGTAACATATTACCCCAAACTGAGTGGATTAAATGATAAAAATGTATTGTCTTTCAGTTCTTTGTTTGAAGTCCAACATGGGTCTCACTACGCTGAAATCAAGCTGTCAGCCCGTCCCTGTTTCTTCCCGGAGGCTCTAGGGAAGGAGAATCTGTATCGTTCCCTTATCAGTGTGTAGGGGCTGCCAAATTTCATAGCTTGTGGCCCTCTTCACAGCCAGCAACAGTGCTTCTCTGATCATTCTTCTATAGTTGCATTTCCCTTTTATTCTCTCTTCATCCTTTTTCCACTTTATAAGGACCCTCTAATTGCACTGGGCCCACTTGGATAATGTAGAATTGCCTTCTATTTTTAGTTCAGCTGATTTGCAACCTTAATTCCCTCTGCAACCTTAATTACCCTTTGTCATAACCTGACATATTCTTAGGATGAGAATTAGAACGTGGATTCTTTGGGGGTTGATTATTCTGCCAACTACAGATACTTCTGCCTCAAAGCCCTTATTTGCCCTTGTCTTTGCCTGGAAAAACTCACCTACAATCCTCTCGGCCCCTCTCTTACTTCATCCTGGTCTCTGCTCAGTTTTAATTTCACAGTGGTGGCCTTTTCTGACATCCTTACTGGAAATGCCATCCTTTACTCTCTGCCCTACCTTCTCTTGTGTCTCATAGACTTTGGTTTACTTGCTTGTCCCCTCTCTCTCCCCACTGGAATATAATCTCCAAGAGTGGAGGAATTTTTTTGTTTGTTTGTTTATTACTCTATCATCAGTGCCTAAATAGTCCTGTTACATGGCAGATATCTGTTAATATAAATATCTGTTGGCATAATGAAGGCATTAATGGATGGATGTGACCTCACTCTAGGGGTCTTGCAGCTAGGACAGGTCATACACAAACCAAAATGAATGAAGGGGGTTGCAGAACGTTATTTGTTTTCTGATGGCTGCACATCCAGTTTCTTCTGCCTTAGGTGCCCTTCACGTGAATGTTTGTGTGTGCACTTGAACCTCATACCATGAAAACTTACAAGCATCGTGGTTGTGACCACACTTTGAGTAACAAGCCTTCCCAGTGGCTTTCCTGGAGGCTTCCATCATATGGAACACATTCATTTCTGGGAAGGAATAATTTTTGAATGAAGATTCTGATGTCTACTTCTGAGATAGCTCCCCCCACAAGAAGATAACTATTTCCTAAGGTGTCAGATAGTAACTAGGTTGCAAACTGCTTTCCTTTCAGCACACTGCCCATCTGAACCTCATTTGCTTCTTCCAAAGTGCCCATCCGTATCACTGCCCCCAGGTTTTGCCTCCCCTGTGCCAGAGGTGGAAGATTTAAGATTTGAGTGGCAAAAGTGACACAGCTGAATGTTGCCTGACTCTCTGGTTCAAAAATATGCTGTGCTTTTATTTTCTACAAATGTAGTAGCCATTAAGCATATATTAAAGAATATAGATGTCATACAATTTTTCCTTTATTTTTATAAAGACCTGGCTTTTATGTTCAACTAGTTGACATTATAACCTGGGAAAAATGAAGAAACTTCTTGCTCAAAATTGTCACATCATCATAGAGACTTGTCCTCCTCAAAAAAACTACAATTTTTAAGGGTCAGTTTGTTAAATCTAATCATGTATTCATCATATATATATATATATATATATATATGCGCCAAGAGTTACATACTCTCCTATGAATATTTTCCCAAGGTGTCACGGTTGGAAATTGTCTTTCCATTTGAAGCAGTTTGTTTAATTAAGGACCAGGTAACTTCTAGAACCAAAGTTTTTGAGCTCTTTTGAGCATGAGCCATAGCAAGAAACGCATTTTTCATTGAAATTAGAACAATGAAACAAACATTTCATGTCTGTATAGATTGATATTATAGCTTTAGTAAGCATTTCAGAAGGACCCCTTTCCTGCTGGTGGTAGTACTCTGATAGTTTCTATCCTGGTTCTTTTATTCTGAATGCTTATTACAAGCTTTTAAATTTATTTCACAGCTCACTAAAGGGCTACAGTTTTTAATTTGAAAAACTGTTGTGAAAGGCCCAACTTACCTACACTGAGAGCTTCAGAAGGAACCAGTGTATAGGGCTTCCTGCTTTCTTTTTATCCCAAGTGATTCTTGCCACCTTCAAATTTTCTTATTAGCCTCACCCTGGATATACCTGTCTCTTGTACAACTTTTCAGCTTCTCTGCAAAATTACAATTTTCTGTTCTTTTCCTATTTCAAATAACATTTGGAAAAGATGCTTTTCTCCTAGGACTTGGCTTAAATTCTCACACAAAAAAAGTCAAGTTGGGGTTCATTTATTCATTTGACATGCATTTATTGAGCATTCACTGTGACAGGCACAGTTCTGGACAATGGTTATAAAGTAGGAAAGTGTAAAACGAGTATTATGTCAAAATTAGAAAATGCTTCCCTCATTGATGCTGCATTGTGGTGGGAAGGACATACATTAAACAACCAGTAATTTAGTGTGTCCAGTGGTTAAAAGTGCTGTGAAGAACATAGACAAATTCAAGTTGCTAGAGGTGAATTGGGTGAAGACAGGATTCATTATTTTTCAATGAGTAATAAAGCAGCCCTCATTGGTGAGCTGACATTGAGCAGAGACCCACAAGACGTGAGGAACCATCCATCTCGCTATCTGGGAAGAGTTCCTCCCTGAATATAACTCCTGCTGTGGGGGTGGCTTTCAAAGTTTACACTGTGACATCTTTTTCTTCTCCCTGTCTCCATCTCAATTGTGAAAGATTGGAGTCTACTTCTTTTTCACTTTTTTTTTTTTCTGGAGGTCTAAATTACTGTCAGCTTTTAGAATAATACATGTTATCAGTTCAACTTTCTTTCCCTTTAGTCCTCATGTAGGAAACTTGCTGACAGAAGCTAAAGTTTCACCATCTGCTTATCTGCTAATATTTTAGTCAGTATGTGGTTAGGTACTTGCTCCCAGCCTGCAAGTCATGTTAACCATTCCAGTCACCTGGATATTGAAGTAACTTTCCAATAAAATGACTCAGGGCAGAGTTATATAGACACCATTTAACAAATGTCTACTGATACAAAGGAGGAGGTAGATTTTTTTCTCTTTTTCTTTTTTTTTTTTTTTTTTTTTTGAGACAAAGTCTCACTGTGTCCCTCAGGCTGAAGTGCAGTGATAAAATCATGGTTCACTGCAGCTTCTAACTCCTGAGTTCAAGCGATCCTCCATCTCAGCCTCCCAAATAGTGTTAACTACGGGTGCGTGCCACCACATCTGGCCAATTTTTTTAAAAGTTTTTTTGTAGGGCCAGAGTCTTGCTATGTTGCCCAGGCTGGTCTTGAACTCCTGGGCTCAAGTGATCCTCCGGCTTCAGCCTCCCAACATGCTTGGATTACAGATGTGAGCCACTGCACCCTGCCAAGAGGCAGCTTTTAAATGACTATTCCTGCAGGAGGGGAGTAAGTTTTTCCTCTGTAAAAATTTCCTTAGAGGTACGTCTTTCTGCTAAACTTTTGTGGAAGAGTTCATTTAAAAAATAATTTCCAAATATTTATATCTCTTTATACAAGATTAAACATTTTGGAATATTATTAAGGATAAACCTTTCAGAAGGGTTTAAACATTTTAAATCTAAGTTATATTAGAAGTGGTCAAGAGTTTATAATAGTTGTCAGCTCATTTAATGTCTGTCAACACAGAAAAATAAGATTAAGTGTATATGTTATGCAGAATATTCAAGAATATGGTTGATCCTTGAACAACTTGGGGGTTAGGGACACCAACTCCCCTCACAGTAAAAAATCCAAGTATAACTTTTGACTCCCCTCTAAAACTTTACTCATGGCCTACTTTGACTGAAAGACCTACTGATAACATAGTCAATTAACACATATTTTGTATGTTATAATGTATTGTATACTATATTCTTACAATAAAGGAAGAATTCTTTATTCTTACAATAAAGAGAAGAGAAAATGTTATTAAGAAAATTATAAGGAGGAAGAGGAGGGGTTGGTCTTGCTGTCTCAGGGATGGCAGAGATGGAAGAAAATCCATGTATAAGTGAACACATGCAGGTCAAACCTGTGTTGTTCAACGGTCAACTGTATTTTGAACATGTAAATATAAACATTTCAGGTTATTTAATAATTTGAATATGTAACATGAACCTAAACTGCAAAATATTTGATTATTTTCTTACTTTCCCTTGAAGTTCTTGTTGATTTATATTATCTACATTTTTTTTTAACTTTTAATATTTTTAATAGAGGTACATTCTTGCTTTGTTGCCCAGACTGGTCTCAAACCCCTGGCCTCAAACTATCCTTCTGCCCCAGCCTCCCAGAATGCTGGGATATACAGGCATGACCATGCCTGGCCTATGCTTTTTATATTTAGATAATTTACTATTTATTATTCTACACTGACTTTAAAATTCGATGGAAATGGCAGTACAATTTGTATCATGTTAATTTTTAAAATTAACTCTGACTTCTAACTTGTGTCTCACATAGGAGACTTGGTATGGTCTAATGCCTGGTAGATAGCAGCCAATTGGACCACCTCTTGATTTATCTAGGCATGGAAATCAGAGATCATGATACACAGTGGAAAAGACCATTACACAAACTGGACCTTCTCTGGATTTGTTAAAATCGCATGCTCTCGCCTAAGTATGACATCTTGAAAACTTTTAACAGAGCCTCCACATCTCTGAATTCTCTGTCCTTACAG
Seq C2 exon
CAGACAAGATCCAAAGTGAGGTGGAGACTGTTCCAGAAGCAGGACGACATGAAGAGCTTTACTGGGGGCAAATCTGGAAACAGATTGCAAGTGATTTAATCAAGTATGAAGACTCTATGATAAGTATTTCTCGGTTCCCCAGACAAGGTGATTTGTCCTGCCAGGTTAGGGCAGGACTATATACAACTCACACAGGACAGAAATTTTACCAATGTGATGAGTACAAAAAATCCTTCACTGATGTCTTCAACTTTGATCTTCATCAACAGTTACACTCAGGAGAGAAGTCTCATACATGTGATGAGTGTGGAAAAAGCTTCTGTTACATCTCAGCCCTTCATATTCATCAAAGAGTCCACATGGGAGAGAAATGCTATAAGTGTGACGTGTGTGGTAAGGAATTTAGTCAGAGCTCACATCTTCAAACTCATCAGAGAGTCCACACTGTAGAGAAACCATTCAAATGTGTGGAATGTGGGAAAGGCTTCAGTCGTAGATCAACACTTACTGTACATTGCAAATTACACTCAGGAGAGAAACCTTACAATTGTGAGGAATGTGGAAGGGCCTTCATACATGCTTCCCATCTTCAGGAACATCAGAGAATTCATACTGGGGAGAAACCATTCAAATGTGATACATGTGGTAAGAACTTCCGTCGTAGATCAGCACTTAATAATCATTGCATGGTCCACACAGGAGAGAAACCATACAAATGTGAGGACTGTGGTAAGTGTTTCACTTGTAGCTCAAACCTTCGTATCCATCAAAGGGTCCACACAGGAGAGAAACCTTACAAGTGTGAAGAATGTGGTAAGTGCTTTATTCAGCCTTCACAATTTCAGGCCCATCGGAGAATCCACACTGGAGAGAAACCATACGTATGTAAAGTGTGTGGTAAGGGTTTCATTTACAGTTCAAGTTTTCAGGCCCATCAGGGAGTCCACACTGGAGAGAAGCCATACAAATGCAATGAGTGTGGGAAGAGCTTCAGAATGAAAATTCATTATCAAGTGCATCTGGTAGTCCACACAGGGGAAAAACCCTATAAATGTGAAGTATGTGGTAAAGCCTTCCGTCAGAGTTCATATCTTAAAATCCATCTGAAAGCACATAGTGTACAGAAACCTTTTAAGTGTGAAGAGTGTGGGCAGGGCTTCAATCAGAGCTCACGACTTCAGATTCACCAGCTGATCCATACCGGTGAGAAACCATACAAATGTGAAGAGTGCGGAAAGGGATTTAGTCGTAGAGCAGATCTTAAAATTCATTGTAGGATCCACACAGGGGAGAAACCATATAATTGTGAGGAGTGTGGGAAGGTCTTCAGTCAGGCCTCGCATCTTCTAACCCATCAGAGAGTTCACAGTGGGGAAAAACCATTTAAATGTGAAGAGTGTGGGAAGAGCTTCAGTCGGAGTGCACACCTTCAAGCCCATCAAAAAGTCCACACTGGAGAAAAGCCATACAAATGTGGGGAGTGTGGAAAGGGCTTCAAGTGGAGCTTGAACCTTGACATGCATCAGAGGGTGCACACAGGAGAAAAACCCTATACATGTGGGGAGTGTGGGAAGCACTTCAGTCAGGCCTCAAGTCTCCAACTTCATCAGAGTGTCCACACAGGAGAGAAACCATACAAATGTGATGTATGTGGTAAAGTCTTCAGTCGGTCTTCACAATTACAGTATCATAGGCGAGTTCACACTGGGGAAAAACCTTACAAATGTGAGATATGTGGTAAGAGGTTCAGCTGGCGATCAAATCTTGTAAGTCATCACAAAATTCATGCTGCTGGTACATTTTATGAAAATGATGAGAATAGTAAGAACATCAGAGAGTTGTCAGAGGGAGGAAGTTCTACAAGGTGATTAAAAAAAAAAAAACAGAACTCATGTACAACCTGAATGCTTGTAATTAGATTTCATAGGAGGGAAAAATTTTCTTTATCAACCTCTTTGAATTTATTTGATTTGTAACGCTCCACATTTCCACCTAGACTTTTTTTTGTTTTTTATTTTTTGTTTTGAAACAGAATCTCGCTCTGTTGCCCATGCTGGATGCAGTGGTGCTATCTCAGCTCACTGTAACCTCCACTTCCCGGGTTCAAGTGATTCTCCTGCCTCAGTGGATTACAGGTGCACACCACCACGCCTGGCTAATTTTTGTATTTTTAGTAGAGATGGAGTTTCACCATACTGGCCAGGCTGGTCTCAAACTCCTGACCTCATGTGATCCACCCACCTCGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACCGCCCCTGGCCTCCATCTAGACTTTGAAATGATTGCCTTCTAATTACAGTAGCATTCTCTTATTTAAAATATTTGTTTTATTTAAGTCAGTGTTTAAGCAATAGCTCAGCATATCCCAGTGGTCCAGTGACCACACAGCTGAGAACCCTTGTTAAGTGGTACAGTAAAGCATTCTGTCAAAACTTTGACATTTATGACATGTTACCTAGGAAATAGGACTTAGAAAATGAGTTTGACCTGGGCTTTAAAAAAGTATACTGATGAAGGTGCCAGAATTGATGTCCATTAGACTGTAAGCTCCATGGGGGCAGGAACTTTGCTACCGAATCTATACAACCTTAACATTGACTAGTGCTTGTAGGTGTGCTCAATACTTGTTTGTTAACTGAATCAAAAGGAGTAAATGCACAATATTTGAACATTGTATCCAAAGGAAGAAACCTGCGAAATAAAATTATTTGCAGAAATGAACATTTGTTGAAATGCAGAAAACCACTGGATACTGCAGCCTACAATATTAATATGATATTACTCTTTTACAGTTGACACCTGTCCTCTCTGTAGTCTCTTCTCTCAAATTTGGTTCTTATTGAGAGCCTGTCTAGTTTCCCAAAGGTTTTATAAAACATAAGTTGAAGTACCTTTATTTTTAATTTTATTTTTGAGACAGGACCTCGCTCTGTCACCGAGGCTGGAGTGCAGTGGCATAATCATGGCTCACTGCAGCCTCGTCCTCCCAGGCTCCATCCATCTGCCCATCTCTCCCTCTGAGTAGCTGGGACCACGGGCACGTGCCACCACACCCAGCTAATTTTTGTATGTTTGGTAGAGAAAGGGTTTCACCACATTGCCCAGGCTGGTCTTGAACACCTGAGCTCAAGCAATCCAACCTCCTTGGCCTCCCAGTGTTAAATTACAGGCGTAAGCCACCACACCCGGCCAAGTTGAAGTATATTTTGTGATTTTTCTGACAGTGCAGACTGAAAAAAATTTAATTAACCTGACAAGAGTTTACTGAATATCACACAATTGAGTTTTTAATCCATTAATGTTAAGGCAGGGGTTTACTCTAACACTTTTAAAGTGTCAGAAGTAGTTGCCAATGCCAAATTTTTATCAGCCCCCTTGAATTTATTTGATTTCTGACTTTCCACATTTCCATCCAGACTTTGACATGATTGCCGTCTAATAACTGTAGCATTCTCTTATTAAAACTTCTGGCTGGGTGTGGTGGCTCATGCCTGTAACCCCAGCACTTTAGGAGGCCAAGGCAGGTGAATCACCTGAGGTCAGGACTTAGAGACCAGCCTGACCAACATGGTGAAACCCCATCTCTACTAAATACAAAAATTAGCTGGGCATGGTGGCAGGCGCCTGTAATCCCAGCTACTCAGGAGGCTGAGGCAGGAGGATTGCTTGAACCCGGGAGGCGGAAGTTGCAGTGAGCCGAGACTGCGCCATTGCACTCCAGCTTGGGTGACAGAGCAAGACTCCGTCTCAAAAAAAAAAAAAAAAACTTCTGAGGTAGGGGCTGTACCATATTTTTGCCCCACACCCATTAAGCGAATACCAAAAACAACTTGTGGAAATTTGATAATTTTATCAAATTTATTATTTGGGCAGGATTGGCATTTACCATGCTTTTCCCTATTGCTGGCAGTAAAACATGGGTTTAAGGAAGAGTGTTTTTCAGAATTTACACTGTATATCTCTGATTTGGAAGTTATATAATTGGAATTTATGATTATGAGATTAAAATACCAAAAAGACTAAGTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000159905-ZNF234:NM_001144824:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.094 A=NA C2=0.053
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)