MmuINT0180051 @ mm10
Intron Retention
Gene
ENSMUSG00000074282 | Zfp94
Description
zinc finger protein 94 [Source:MGI Symbol;Acc:MGI:107610]
Coordinates
chr7:24301796-24309197:-
Coord C1 exon
chr7:24309071-24309197
Coord A exon
chr7:24303874-24309070
Coord C2 exon
chr7:24301796-24303873
Length
5197 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGG
5' ss Score
6.74
3' ss Seq
AATTCTCTTTGTGTTTCTAGGAG
3' ss Score
9.46
Exon sequences
Seq C1 exon
GAGATGGTGACCTTCAGGGACGTGGCCGTGGTCTTCAGTGAGGAGGAGCTGGGGCTGCTGGACGCTGCTCAGAGGAAGCTGTACCACGATGTGATGCTGGAGAACTTCAGGATGCTGCTCTCAGTGG
Seq A exon
GTGAGGACGGGTGTAGCAGACGATGGCTCCCATGATGTCTCTGTGATGCTGGCTGTATATGCAGCTCTTGAAGGGGCACCCGGAGTTTTAATCATTGTCAGGCACCGAGCTGGGTCATTCTAGTGCCCCGGCCCCAGCTCATTTGTGTGGTTCGTACATGGACCACAGTGGGCAGTGTGATGCCGTGGTTTTATGCCTTCTCTAATTGTAATCACCTCCACACATGTAGTGGATAGGTGAACATTTATTTTTTAACACTAAAAATCTTTCTGGGGCTAGAGGGATGGCTCAGGGTTAAGGGCTCTGGCTGCTCCTTCAGAGAATCCTAGTTTGGTTCCTAGCACCCACATGGCAGCTCCCAGTCGCCTGTAACTCCAGTTTCACAGAGATCTGACTCCCTTGTCTCGCCCCCACAGGCACCAGACATGCACATGGTGCACAGACACACATGCAGGCAAAACACCATGCCCATAAAAGAAATAAACCTTAAATTAAAAAAGAAATCACTTTGCGTGTGTATGTTTGTATGTTTGTGGATGCATATTGCCGTGGCATACATATGGAGGTCAGAGGTCAGCGTGTGGGAGTTGGTTCTCTCCTTTCACCATTCGGGAATTGAACTCAGGTCTTTGGACTTGGCAGCAGGTGTCTTTCCACTTAAAGCTGATTTGCTTGCCCTTTATGAACAATTTTTTTTTTTACAAAATAATAATAATTAAAAGAAGGGTAGAAAAGCCACACATGGCCCTGCACAATTTTAATCCCAGCACCTGAGAGGCAGAAGCAGAGAGGCAGAGAGAGAGGCAGGAGGCAGAGAGAGAGGCAGAGAGGCAGTGACAGAGGCAGTCTCTGAGAGGGTAAGGCTATCCTGGTCTACCACATAACAAGTTCCAGGACAGCCCAGGCTACACAGAAGGACCCTGTCTCCAAGGGTCAGTGGGAGGGAGCCCTTGGTGGTAACTTCTCATTGCAGTAAAACTTATAGTTTATTGCCAAAACCAGTGTGAGAGATTGCAGGAAGAAAACGGTGTGTGTCGTGGGTGTGGGTGAACATGTGTGCAAGTGTATGTGTGAGTGTGTGAATATTTGTGTGAGTATATGTGTGTGAACATGTGAGTGTGAGTGTATGCAAGTGTGTATATGTGTGAGTGTATATGCATGTGTATATATGAGTGTTTGGTAAGTGTGTGTGAATATGTGTATGTGTGTATATATATGAGTGTGTGTGTGTGTCTGTGTGTATGTGTGTGTGTATGTGTGTATATATGTGTGAGTGTGTGTGTGTGCGTGTGCGTGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCTGGTGATACAGATTGAATCTAGGGCCTTGAATGTGCTTGTGAAGACATATTCCAAACACTGTTTTTACTTTTTATCTAGGTCAGGGTTCTATGACAATCCAGGCCGATTTAGTACTTACTGTTTCCTGGGCAGCTTTGAACCTGTAACCCTCCTGCCCCAGCTTCCCAAATGCTGGAATTACAGGCCTGCACCACCAGTCCTGGTGAAAATGGACCTTTCTAATATTCATGCTAATGTCTGCATCTTTTGTCTTTTACATAAAACATTTCTTTTGTTATGGCACAATTAGAATATTAGGAAGCAGGGCAGAGACAGGAAGATCACTATGAGTTTGAGACTAACCTGGGGTATAGCATGAAATTCTTGTCTCAAAAACTAGCAGAGGCAGGTGGATTTCTGTGAGTTTGAGGTCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGCCTTGAGAAACAGAACAGACAAACAAAAACAAGTTTGGAAAACATGATGGTGTATGTGTTTGTGCACACAAGTGTGCATGTGGTGTGTGGGTATGTGTGTGTGTGTATGTGAGTGTACATACATGTGATGGTATGTGGCACCAACGCATGTGTGTCATAATGTGCTTGTTGAAGTTGGAGGACAACTTGTGAGTGTCGCTTCTCTCCTTCACCCGTGTGGGACCCAGGAATGGAACGTAGGCCGTCATCCTCAGCAGCATCTGATTTTACCTTCGGAGTTATCTTGTTGACCTGCTCATGATTTACTTCAACTTATTAAGTTTTAGTATGTGTGTGTTTATCTGTGGGTCTCCACAAAGGCCAGAAGAGGGTATTGTATTCCCTGTGCTATAGTTTACTGCCTGTGGTGAGCCACCCAGTTGTGGGTGCTGGGAACTGAACTGGGGTCCAATGCAAGAACAGGAAGTGCTCTTAACTGCCGAGCTGTCTCTTCAGCCCCCAAGAGTTAATTTTAAATAAACCTCTGCATAGAGCTTCAGACCACCCAAGCTGTCTACCCAGTTTCAGAGAGTTCCTGAGCTTTGAATGGTGAAGATGTCCACTCGTGGCGGTGACCCTGCAGGTGCAGACAGTGAGGCTCTGAGTCTGTCCTGTCTAGCTTGTCATCTTGGTTGGGCACAGTGTTGGCACCAGTGCCAGCCTGTTCCAAGGCCACAGAGAGACTTGTCTGGGTCTGTACTACCCCAGTGCTGCTGTCCTGGGATTTTATCCTCAGTTCTCTACTCTCAAGGGCTCCTTTGGGTGTCAACCACGTCATGGCTTCCAGCGACTAATGTACCTATGTGACTTATTACTTGGTGAAGTCAAATCTGGGGCTTACAGTATCCCGTGTGACTGTTCCTCCCTCCCATATACCTATGTAGACATGGCCTGTGACTTCTTACCCTGCCAGTCATTTCCACTCACACTGGTGTCCTTGATGTATCCACACATGCTCTCACTTCCTTGCCTGCTTTTAAACCGTCATGAATGTTTTGCCAGGTGGTGGTGGCGCACGCCTTTAAGCCCAGCACTTGGGAGACAGAGACAGGCAGATCTCTGAGTTCAAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGACTCAAAAAACAAAAACAAAAACAAAACAACAAACAAAACAATAAAAAAGAATGTTCTTAACCTGGGACCCTCCTGACCTCTCCCTGGGTTCATGCTGGTCTCGTCTAAGCTCTTACATCATACAAGGGGCCTTATCGTCCTCTTCCCTTCCCCTGTCCTGTTTTGTTGTCTGTCTGACCATTGATGGCTGTGTGCAGTTCTACAAGGCCTTTGTCTCACTGTGTTCCCCTGCAGCGTGGGCTCAGGAGGGGACCTGTGGAGGGCAGCTGTGCTGTGCATATCTATTGAATGAATGAATGAGTTAATAATGGCTGTGTGTTGCTGGGCAGTGGTGACGCACGCCTTTAATCCCAGCAATTGGGAGGCTGAGGCAGGCGGATATCTGAGTTCGAGACCAGCCTGGTCTACAGAGTGAGTTTCAGGACAGCCAGAGCTATACAGAGATACCCTGTCTTGGGAAAAAAAAAATGGCTGTGTGATTTTCTTCCAGTTAGACAGGGAGGCACCTAATGGTTGGCAAAGTTTAAAATGTATAATCAAAGCATAGTATAGAATAGGTTTTTTTTCTTTTGACAACTTCACATCAAGACATTTTTAAGATGTCTAATTTTAATTTTCTTTCTTTTTTTTTGGTTTAATTTTAATTTTCTAGGTGCCTTTTCAGATAGATAAGTAGATAGATAAATAGGTAGGTAGGTAGGTAGGTAGATACATACATACATACATACATACATACATACATACGTACGTACATACACAGACACACAGATGTTACAATTCATTGTCTGAACACTGTAGCCCCCAGCATCTGTAACCAAAGATGTGGGCACAAAGTCTGTGTTTAGGTGTCTGCACTACAAAAGTAATAGTAGTAACCCCACAGGCTTACGTGGCTTATAAACAAGGAAACCCGGCTCTGGAGAAATGGTGAGCTCTTGCAGAAGACCCGAGCCTTCCTACCCACATCCCGCGGCTCATGTTTGTAACTCTAACTCCAAGGAATTCAATGCTCTATTCTGACCTCAGGGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGACACACACATGTTCTTTCCTCAAAACAGCTGCTGAGAAGGAGAGGTTAAGAGGCTGGTTTTGTTCTTAGCATACACACGATGGCTCACAACTGGCTCTAGTTCTGGGGGATCGCGACCCCCTTCTGGCCTCGGTGAGGACTAGGCACATATGCGGCAAACAGACGTGCAGGCAGGCAGACACTTACACACATGAAATAAAAACAGAAATGCACACGCAGAACTAGCCTTACTGTTCTAGCAGCTTGGAAGTCCAAGTTCAAGGCACCAGTAGACCTGATGCCTGATAGGGGCTGCTCCCAGGGCTGCCTGCCTCTTCTCGCTGGGTCCCCTTGGGTGGAAGGGCAAGGAGCCTTTATGGACCTCCTTTATAGTCATTAACCCATTCTTGGAGTCTCCAGGTGCAGGACCTAACTGCCTCCCTGATGCCATCCTCCCAGGGCTCAGGATTTTGGCCATCTTAAAGAGAATGTCTTTTCCCGTGGCTTTCCCATGGCACACTCAGTTGGTGGGGAGGTGTTGTCTGTTTTGTTGTGGCATTACTGAGGGTGGACCTAGGGCCTCACAGGTACTAGGCAAAGCTACTGAGCAGCCTCCGAGGCTTTTAAAAGACCACTTTTTTCTTCCTTCTTTGCTTCCTTTACTTTTCTTTTCTTTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTTCCTTCCTTCCTTCCTTCCTCTTTGAGACAGGGTTTCTCTGTGTAGTCCTGACTGTCCTGAAACAGGCCAGGCTGGCCTCGAACTCACAGAGATCGGCCTGCCTCTGCCCCCCCAAGTGCTGGGATTAAAGACACGTGCCATCACACCAGCTTGCTCTTTTTGAAATATTTTTCTTGCTTTGGAGATAAGAAAATCTTAATTTGTCACTTACCTGTGATACTCTGTAGAGCTTATGATGGTTCTCGTTGGTTCTCATTGTTATGTGGTGAATGGGAGCACTGACCTTGGCTTCTGGACGTGTCCTGAGATGACAGGATCCTGGGTGTTAAAAGGAAGGGAGCCGTTCATTCTCTGGTTCAGTGAAGCCTTAGTCTGTGGTTTAACTGTATAATCCAACATCACCCAACAGAGCATTCACACGCTCTACCTCTCTCTCTGAATTCTCTTTGTGTTTCTAG
Seq C2 exon
GAGACAAGAATCCTGAGGAGATGGAGTCTCTTGAGGAAGTGGGATTGAGGCACCTGTCACATGAGGCGCTTTTCTGCTCACAAATCTGGCAGCAGGTTAGCAGGGACCTAATGAAGGCTGGAGACTGCAGAGTAAGCATCAGGGAAACTGGCTCTCCGTTGAAGCGAGATGATGCACATGGTGCAGACAGGAAGTACAGCAAACATTCCGGTCAGAAACCATGGCTCCAACTCCACTGTGGAACAGATGGTGGTGAAGAACCTTACAGAGAGGAGAGGAGCGAGAAAGACTCTTGGGACTCTCCTCTGCAGGCTAACGGGCGACCCCCCGCAGGAGAGAAGAGGTATAGGTGTGAAAAATGTGACCACGCCTTCTGTCGGTTATCGGGTCTCCAAGCCCATCAGGTGAGGCACACTGGAGAGAAGCCATACAAGTGTGAGGAGTGTGGCAAGGGCTTCACTCGGGCCTCCACCCTTCTGGACCATCAGCGGGGCCACACTGGAAACAAGCCCTATCAGTGCCATGCTTGCTGGAAGAGTTTCTGTCACAGCTCGGAGTTTAACAATCACATAAGAGTCCACACGGGAGAGAAACCCTATGTATGCGAGGAGTGTGGGAAAGGCTTCAGCCAGGCCTCCCATCTCCTGGCCCATCAGAGAGGCCACACTGGAGAGAAACCCTACAAATGTAGCACGTGTGGGAAGGGCTTCAGCCGGAGTTCAGATCTCAACGTTCACTGCAGAATCCACACGGGAGAGAAACCCTATAAGTGTGAGACGTGTGGGAAAGCCTTTAGTCGGGTCTCCATACTCCAGGTGCACCAGAGGGTCCACAGTGAAGACAAACCGTACCAGTGCGCAGAGTGTGGGAGGGGCTTCACTGTAGAGTCACACCTTCAAGCGCACCAGCGCTCCCACACGGGAGAGAGACCCTATCAATGTGAGGAGTGCGGGCGAGGCTTCTGTCGGGCCTCCAACTTTCTGGCTCATCGTGGAGTCCACACAGGCGAGAAACCGTATCGATGTGACATATGCGGAAAACGCTTCCGGCAGAGGTCCTACCTCCATGACCACCACAGGATCCACACGGGAGAGAAACCTTACAAATGTGAGGAGTGTGGGAAAGTCTTCAGTTGGAGCTCATACCTCAAGGCCCACCAGAGAGTTCACACAGGAGAGAAACCATACAGATGTGAGGAGTGTGGGAAGGGTTTCAGCTGGAGCTCAAGTCTCCTAATTCACCAGCGCGCCCATGCAGAGGATGAGGGTCGCAAGGATTTGCCTGCATCAGAAGGCTCACAGGGGAAACAAACTCTATAATGTTTTATAGTTTGATATTTCAACTGGAAGCTGAAAGGTCCCAACTCTTAGAGTTCTCAAGGGAGTTGTAGTATTAGTATTTTGACTGGACCAGGATGCATTTTGATGCTTGGGAGACCACAAGCAGAGAAGCCTTGTAAGTTGGAGCCATGTAGACTTCAGTCAGAACCTTGACCTTTAACACATGGAGACAGTAACCAACCGGGGGAAAGTTGAGTGTGACCTGGAGGTATCTCAAAGGAAGGAACCAGATCACTTTCTTATGTTGCTGGTTGCAACCCCGTGTGGGGCTTCATTACCGTAAGTGACAGTCACAAGATATTTAGGAACACTACAAGCTTTCTGCATATCCAGGGACCAAAACCTCAGAATTCAACAGGTTCTAGGAGCTTCTGGCAGCTCTTACCCATGATGCAACTGTGTGACTTCACTGCAGCCTTCCTCAGAACACACCATCACCACACACAGGGCCCAGCCTCTCTGCTCAGGGTCGGCGTTGTTGTCTATGACAAATTGCATGGCTTTCTACAGTACACATGCTTTCTGTTCTTCCGGAAGCGTTGCTCACGGAGCTTTCCTGTTCTCGGTCTTCTAGTTCAGCTGCAGACTCTGTTGTGTGTCTCAGTGGGATTTTGACCATCCTCATTACTCCCCTTTACAGAAAGTGTTCCACGGCACTACTGTGCAAGTTAGGTTTTGTGGTTAATAAATTACCACTTACTGAAATTGTTTAAAATACATTTCTTCCCAATTAATAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000074282:ENSMUST00000032673:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.197
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=97.6)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0),PF134651=zf-H2C2_2=WD(100=5.9),PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=5.9),PF134651=zf-H2C2_2=WD(100=5.9),PF134651=zf-H2C2_2=WD(100=5.9),PF134651=zf-H2C2_2=WD(100=5.7),PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=5.9),PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=5.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types