HsaINT0187301 @ hg38
Intron Retention
Gene
ENSG00000124459 | ZNF45
Description
zinc finger protein 45 [Source:HGNC Symbol;Acc:HGNC:13111]
Coordinates
chr19:43918870-43919699:-
Coord C1 exon
chr19:43919573-43919699
Coord A exon
chr19:43918963-43919572
Coord C2 exon
chr19:43918870-43918962
Length
610 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGG
5' ss Score
6.74
3' ss Seq
ATGTCCTTGCCTTTTCACAGGGC
3' ss Score
9.7
Exon sequences
Seq C1 exon
GAGGCAGTGACATTCAAGGACGTGGCTGTGGTCTTCTCTGAGGAGGAGCTGCAACTGCTGGACCTTGCCCAGAGGAAGCTGTACCGAGATGTGATGCTGGAGAACTTCAGGAATGTGGTCTCAGTGG
Seq A exon
GTGAGGACAGGCATTCTCTGACTGAACATTGGCTCCCTCTGTTGTCTCTCTGTCCTTGGGTATACAGGGCTTTGGAGCTCTTGAACTGGTTTTCAGTTTTCTAATCATCCATCATAAGACAGATATGGAATTTTTAAAGTCTTTCTCCCCTGGCAAAAGTGTGTATTTTGTTAATGAACCATAAATTGACAGCATGACAACTATACACTTTTATCCTTTCTCAAATTGTGGTCATCTCCAGTTAGTGGGTCCTGATATACATTTGATGAATTGTACCATTGGTTTTTTTAATGAAATAAAATGGGGTAGAAAATGTCAGAGCACTTGGCAATAACTGCACATTGCAGCAAAAACTATGTCCTGTTGCCAAGAAGAATGTGAGAGACAATGGAGGGGGTATGATGAAAACATTTTTTTTCCCAGTAATTTATACTTATATCTGCATATCTTGGGTCTTTGCATGAAATATACTTCCTCCAATGGGTCATGATTAGAAGTGTGGAAAACACTAAGTTTGATGTCCTGAAGACGATGAAATGAGGACAATAATTTTGAGTAATTTTGGCTTCTGATGTATTAATTATAAACCTATGTCCTTGCCTTTTCACAG
Seq C2 exon
GGCATCAGTCCACACCAGATGGCCTACCACAGTTAGAGAGAGAAGAAAAGCTGTGGATGATGAAGATGGCAACCCAGAGAGATAACTCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000124459:ENST00000269973:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.434
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCAGTGACATTCAAGGACGT
R:
GGAGTTATCTCTCTGGGTTGCC
Band lengths:
214-824
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains