RnoINT0081886 @ rn6
Intron Retention
Gene
ENSRNOG00000055608 | LOC102548695
Description
zinc finger protein 45-like [Source:RGD Symbol;Acc:7529325]
Coordinates
chr1:81161994-81163689:-
Coord C1 exon
chr1:81163436-81163689
Coord A exon
chr1:81162090-81163435
Coord C2 exon
chr1:81161994-81162089
Length
1346 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGA
5' ss Score
6.04
3' ss Seq
TTAAAATATGTTCTTCGCAGGGC
3' ss Score
7.86
Exon sequences
Seq C1 exon
CAAAAGCCCAAACAGAGCAGTAGCAAAAGGTGGGTGAATCGCACAGAAACATGGATCCCGGATTCCCAGCTCAGGAGTTGCTTCCTTCTCACCCAGAAGACCAAGGTTGAAGTTCTGTGTTCGGTGCTGTAGGAGACGGTGACGTTGAAGGACATGACTGTGGTCTTCAGCGAGGAAGAACTGGGGCTGCTGGATGCTGCCCAGAGGAAGCTGTGACGTGATGCTGGAGAGCCTGAGGAATGTGGCATCCCTGG
Seq A exon
GTGAGAACAGATACAGGTGCTGCACGTCAGGCCACGCAGGGTGGCCACGCTGGGTGGCCATGCAGGGTGGCCCTGGATCTGACTGGAGCTCTGGAAGTAGGTTCTAGTTTTCTAGTCATCATGATTCCGAGTTGGACATGCTCTTCAGTTTTATTTTTTATTTTTTTTTCTTTTCTTTTTTTTGGAGCTGGGGACCGAACCCAGGGCCTTGCGCTTTCTAGGCAAGCGCTCTACCACTGAGCTAAATCCTCAACCCCGCTCTTCAGTTTTATAAACGAAGTGAAATTAAAGCATGCTAGTACATTTTAGTCTTCCTCAAATTATAATCTCAATTGGTGGGTGGTTGTACATGCTCAGTCGTGCATTGAAGTAAGTTGAGGCAGCTGGAGAGAGAGCTCATCAGTTAATGCTTTCTGCTCCTGTAGAGAACCAGAGTTTGGTTCCCAGCACCCATATCAGGTGGTTCATAGTCCGGGGGATCTGGCACCCTCTGCTGGTCTCCGTGGGCACCTGCACTCACATACACATGCACTGACATATACACATCAAAAAAAATCAAAATAAGTATTGTAGAAAGAATCTCTTATGGACTGTATTTATGGAAGTATTACCTGTCAATAAAAACAATCTGATGTCCTATTATTTGAGACAGGAAATTGGAGGTAGGAGTTCCAGCAGGGAGATAGGAACTCTGGGATAGAGTCAGGCGCAGGAGGAAATTTGCCCCAAACTCTGGGGAGACAAATGCATGAAACTGAGGAGAGATAAACAGCCATGTGGCACTCGTTGAAAAGAATGAATGGGTTTATTAAGTTTCACGCTAGTTGGGGAACAAGCCAAGGCTTGTGGCCTAGGCATTTTTTTTGCAGAAATAATTCTCAGAGTCATTATTTCGGGAATTGAGGCACAGGTGGAAAAAGCCCATGGTACAAAGTATCTAAGAAACAAAATAGGGTTGAGGCCATGACAGGGTCAGCAGGTGCCAAGGCCGATGACTCAAAGTTCAATCCCCGGGGCCTACCTAGTCCCACCTGCTGTCTCTAACCACAGTGGAATGAATGAACGTACACATGCCCTAAATAAAAAGGTAATAAGACATCAAAGAAATTACCCTGGCAGTCTGTCTACGACATTGCCAACAACAGTTTTGAGAAAGGAGAGAGGAGATAATGAAAATAGATGTTTGTAAAATTATACTAAAGTGTACGTTATTTTGGGTCTTTTCAAATGACGTTTGTCTTCCTCTGACTGGAGGTAGCTAGGGGAGGAATAGCTGGATGCCCTGAAGAAGATGCAGTGGGACGCTCGTTTTCTGGACGTGTTAATTTAAAATATGTTCTTCGCAG
Seq C2 exon
GGCATCGGATCGGGACTCCAGATGGTTTGCTCAGGCTCAAGAGAGAAGACATGTTTTGGCTGTTGACAGTGGCTCGCTGGAGCAGTGGGTCTATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000055608:ENSRNOT00000088746:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCCCAAACAGAGCAGTAGC
R:
CCATAGACCCACTGCTCCAGC
Band lengths:
347-1693
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]