BtaINT0008303 @ bosTau6
Intron Retention
Description
NA
Coordinates
chr18:52589765-52592461:-
Coord C1 exon
chr18:52592335-52592461
Coord A exon
chr18:52589852-52592334
Coord C2 exon
chr18:52589765-52589851
Length
2483 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGC
5' ss Score
7.23
3' ss Seq
TCTTCTCTCCTTTTTTACAGGAA
3' ss Score
12.24
Exon sequences
Seq C1 exon
GAGCCAGTGTCCTTCAAGGACGTGGCTGTGGTCTTCACCGAGGAGGAGCTGGGGCTGCTGGACTCGGCTCAGAGGAGGCTGTACCAGGAAGTGATGCTGGAGAACTTCCAGAACCTGCTCTCAGTGG
Seq A exon
GTGAGCACAGTGCCTCGGGGACTCAGTGTCATCCTCCTGGGATTCCTTTGTGGGTGCAGTCATGTAAAGCTCTGGAACTCCTAAAATCATCCTCTTACCTTAGGTACCTATAAGTCCTAGTAATCCCAGAGACAGAGACAATGTGTTTCTGTCCAGGAAAAAAATCTGTCCCTTGAACTATTAATATGAATGGGGAGCTTGTGGTCCTGCCCCATAAAGTCGAGTTGCTGCGCTTTTCGGATTTTCATGGTGCCAATAACTGTAGCTGTGGTTTTTCAGAGGTATTTTGGTTTTTCTGCTTTAGTGACATACTTGTCTTCAAACATACAGAAAATTTGCAAAAGTATAGAACAAGAATACCCCTATCGCTTTTACCTATGGCTCAGTGGTAAAGTATCTGCCTGTAATGCAGGAGACACAGGAGATTAAGTTCGATCCCTGAGTCGGGAAGATGCCCTGGAGGAGGAAATGGCAACCCACTCCTATATTCTTGCCTGAAAAATCCCATGGACAGAGGAGCCCGGCAGGGTACAGTCCATGGGTGACAAAGAGTCAGACGTGACTGAGCACAGCACACACACCTAGAGTGATATTTCACCCCATTCACTTTATCGTTTATGTGAATGCTCTTTTCTCATATGCATAATTTACATCTGAACCATTTGAGGGTAATTTACACAGGCCATGGCCCTAATATCCCTAAATGCTTCTGTGTGCAGGCCAAGTTCAGGAATCCCCAGGACTACACTCTTGACACCAGTGGCAAGCTGGGGGGTGCCCAGAGCCTCAAGTAATTTGCTAGAGGACTCTGAGGACTCACTAAAAGCTGTTATACCCAAGGCTACACTGTTATGTGGAAAGGCTACAGAATAGGCCTTGGATGCTAGGAACGGTCCTTGCCACTGTGGTATCTTTGTTTCCTGGTCTTAGGGCTTAGAGCTAGGATTAGGGGTGTGTCTGCATGTGTACACCTATATTCATATACATAAACATACATGGATATATAAAAATACGTATATGTATGAATATTTATTCAGTTTCATTCATAGTAAGAGAGGTACTAATTCAAATTATACTGAAACGCCATTTTTCATTCATGAGGTTAGCAAAAATTCAAAAACTTTTTTTTTTTTTTTGGGCTGTCTCATGAAGGTTGTTGGATCTTCATTCCCCAACCAGGGATTGAACCCAGGCCCCAGCAGTGAAAGCACCGAGTCTTAACCACTGGACCGCTAGGGAAGTCCCCCAGAATTCAGAAACTTAACACTATTGGGGGTGGGGGGTGGCAAAGTTGTAGGGAATAAAGCACTTTCATGTTTTGACGGTGGGAATGCAACACGATACCACCCCTATGGAGAAGAATTTGACAGCGTCTAACAGAACTATGGATTTACCCTTTCTCAGCAACTCACTTGTAGGAATTTTCCCTGAAGATAACCAAGTACAAAAGAGCATTAATAGTATACTTACTAGTTTGTGTAAGGGAAAAAAGGGAAAAATAAGTAAATGTATGTAAGCAACACAAGGATTAATCAGGAAATCATGAATTTAGTTTCTTGTCAATGGTGAGCTGTGATGGCGTGGAAGGGATGTTTGAGAGGGTCACACTTGTCTGAATAACACCTTTTGGTCTAGTTTGGACTTTTGTAAATATGTTAGGGGACTTCCCTGGTGCTCCAGTGGTTAAGACTCCACCTTCCAATGCAGAAGATGCAGGTTCAATCCCTGGTTGGGGAACTAAGATCCCACATGCCTTGCAGCCAAAAAAAAAAACAAAACATAAAACAGAAGCAATACTGTAACAAATTCAATAAAGACTTTTAAAAAATGATCCACGTCAAAAAAGTCTTTAAAGAAAATATTTAGTTCAACACATTCTAAAAAGTAAATCAAATAAGAATGTGAAGGGATGATCATCGAAAAGAAAAATGAGTTGTGTTTGAAAGGGATACCTTAACCACAGTAAACAGAGAAAGGAAAGGATTCATGGAAGTAGCTAAGGAATACAGTTTATAACTCTATATACCTTTAGTTTTAGGTCTAGTGGGAGGAAAATTGCAGTCCTCAACACTCCTTAGTGGATTTGTTTACTGCAGTGAACAGAATAAGCAATTCTTCTGCAGGGGCCAAGGAAATTCACTGGAGAAAGTATTTTTTCAACAGATAGTGCTGAAACACTTGGACTTCTGTATGCATATATTTGCATGCCTCCCACCTACAAAATGAAAGATTAACTTGAAGTGGATGAAGGGCCTGATGTAAAATGTAGAAGTGTGAAACTTGTAGATGGAAACACAGGAGAAAATTTTCATGACCTTGGGTTAGGCAAAGATTTCTTAGATATGATGCCAAAAACGTGAATCAGAAGAAGAAAAAAAAACCCCAACAAACAAAAATATGATTCAGGAGGGGAAAAAAACAAAAAACCACAAGTTAAACTTGGTCAAAATTGAAAACTTTTGCTCTTCTCTCCTTTTTTACAG
Seq C2 exon
GAAATCAGCCCTTCAAACCAGAGCTTATATTCCAGCTGGAGAGAGAAGAGCGTTTGATGATGGAGTCCCAGAGAGGTGGGTGTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000040209:ENSBTAT00000055043:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.300
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development