HsaINT0185493 @ hg19
Intron Retention
Gene
ENSG00000062370 | ZFP112
Description
zinc finger protein 112 homolog (mouse) [Source:HGNC Symbol;Acc:13021]
Coordinates
chr19:44840776-44844694:-
Coord C1 exon
chr19:44844568-44844694
Coord A exon
chr19:44840872-44844567
Coord C2 exon
chr19:44840776-44840871
Length
3696 bp
Sequences
Splice sites
5' ss Seq
TAGGTGAGG
5' ss Score
7.65
3' ss Seq
TGTCCTTTCCTTCTTTACAGCAC
3' ss Score
12.48
Exon sequences
Seq C1 exon
GAGATGGTGACATTCAAGGATGTTGCTGTGGTCTTCACTGAGGAGGAGCTGGGGCTGCTGGACTCTGTCCAGAGGAAGCTGTACCGAGATGTGATGCTGGAGAACTTCAGGAACCTGCTCTTAGTAG
Seq A exon
GTGAGGATAGGTGCCCTTAGTTACTCAATGGCAGCCTCCTGGGGTGTCTTTGTGTGCTCAATTGTTAGAAACTCTGAAGCCCCTGAAATTATTCTCTGAGATTAGGTGCCCGAGAGTCCTAATAATCCCCGTGCAACACAGACAAGATGTTTCTGATGGTTTTGTCCAGTCTATCCTTGGAATAGTAAATATGGTCCTGCTTCATTGATTTGCCATCAAACAGTTTAGTAAGTTGTTCCAGGTTAGTAAGTTTATTTTTCAGGGCACCAGTAACTGTTGATGAACTTGACTTTTTAGAGGGGTTTTTTTAAAAAAACATTATATTTGTAAATAACTTTAAACTCACAGAAAACTTACAAAAGGACAAGAACACCCATATAGATTCGCCAAGATTCTACCTGGATTCACCTCTAATAACATTTTACCCTATTTGCTCTATCATTTATGTTCATGTTCTTTCCCTCTCCATACATACTTATGTATGTATATGAAAAAATATATATAGTCATAATATCTTTTTCTGAACGACTTGAGGGTAAGTTAATATACCATGGCCGTTTTTCTCTAAATACTTCAGTGTATATACAGAGTTCAGGAGTCCCCAAGTTCACTCTCACCTCTGATACCAATTGCAAGATTAGGAGTCCCCAAGACCCAAGAGTACTGAGCCCCACACTCAGGCTCAATAATTCACTAGAAGGACTCACAGAACTCACTGAAAGCAGTTGTCTTCACAGTTAATGATTCATTACAGGGAAAGGAATCAGATTAAAGTCAGCCTAGGGAAGAGGCCCAGGAGGCAGAGTCCAGGAGCGTTCCAGATGTCAGCTTCCACTTGTCATCTTCCGTGGAGTTGTGGACAGCACTGACTTCCCAGCAGTGAAGTATGACAATACGTAAGGAGCATTGCCAGCCAGAGAGGCTCATTTGAGCCTTGGTGTCCAGAGTTTTTACTGGAGCTTAGTTACCTAGATATGATTGACCACCTGGGTGGCTGCTCTTAGATTCCAGTTTCTCCAGAGGTTAAGCTAATACCACATGGCTCAAAGCCCCTACTATAAATCACATTGTTTAACTATCTGGTGTGTGGCCCAAGGCTTCTGGGTAAACGAAAGACACTCTAATCGGGCAGTATATTCCAGGGACTTAGCGATTACCTTCTCCAGAAGCCAAAGGCAAAATCCAGATCTCTCTTTAAACAAAACTAACTCTTTCCTTTACTGCACAGTCTGTTTTATAAAAAGAGGAATATTCTCTTACCTGTTCTCAGGACAGATATAATGTTTTTATCTTATCTATCATTTATGCTGTGATTTTATCCATAAAGCCAATTTTATATATATATTTTTTCTTTTGAGACAGAGTCTCACTCTGTTGCCCAGGCTGGAGTGCAGTGGTGCAACCTCAGCTCACTGAATCCTCTGCCTCCCAGATTCAAGTGATTCTCGTGCCTCAGCCACCTGTAGCTGAGATTACAGGCAACTACCACCATGCCCAGCTAATTTTTATATTTTTATTAGAGATGAGGTTTCACCATGTTGGCCACACTGGTCTCAAACTCCTGGCCTCAGGTGATCCACCTGCCTCAGCCTCCCAAAGTGCTGGGATTACAGGCATGAGTCACCACGACCAGCCTAATTTTATTCTTTAAAGCATATTTTTCTCCCTCCAGAACAGGATCTAGAGTCTAGTATAGTTGTTCTGTCTCTTTAGCCTTCTTTAATTTAGAACATTTCCACAGCATTTCTTTCTCTTTTATGACAGTAACATTTTTGAAGAACGCTATCACCTCTTCCCTTATTTTTAATAGAACATTCCTAATGATTCCACAAAATTAGATTCAGATGATCCATGCAGCAGGAACACTATGTAGGTAGAGTGTGCACTTTTGAGGGAATCACATCTGGAGGCACGTGAAGTCATCTGTCCCTCAAAGGTGGTGTTAACTTTGATTACCCAGTCACGATGTTATGCAGTTTCCCCACTATATAATTACTGCTTTTTTCCCCATTTGTAATCATCGGGTAACACAAGTATTTTCCTGTAGATTAAGCACCTGCTGATGATCTTGCCTTATCTGGTCCTTACCATGACAGTTACAAAATGATGACTTTTCTAACTTTACCTCCTTCCCATTTAGCAGTCAGCACCTGGCATAAACTTGCAGTCAACAAGAGCCCCCCACTTCTCAAGCATCATTTCAATGTTATTTGTAGGGATTTGTGAAATTTTTTAAAGGTTTATAGTTTATTACTGTAATTTTTTAGATGTTAAAATTGTCCCAAGTTTGGCCTCTTTAAGCTGGCTCCTGTGACCTTGTAACATGTCCCCAATTTTTTTTTTGAGCACTTTCTTACTTTGTTGGCAGAGAACAGTATTTTGTGCTCATCTTTACTTTGCCTTGGCTCTGGAATTATCTTTTTTTTTTTTTTTTTTTTAACTGGGGAATGGTATTTAATGCCAAAGTCTGGATGCTAGGTATGGTCACTGTAGTATCTATGATCTATGTTTCTTTGTCTCAGGACATAGAGCTAGGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTGTATGTATATACATACACATATACACACATAGAAATATGTATACATATGAATAGATGTTCAGTTTATTTCAAAAGAAATGTTCATTACAATTATACTGAAATGCCATTTCTCACCCATGAAATTGGCAAAAATTCAAAAACGTAACACTATACGTTTTTTGGCAAAGCTGTGGGGAATGAAGAACATTCATGCGTTGAAAGGAAGAATGCAAAATGATACAACCCTTAGGGAGGGGAAGTTGACAATATCTAACAAAGCTAGGTATTTACCCTTCCCCGGCAACCCATTTCTGGGGATTTTCCCTAAAAATAGCCATGTCCAAAAGAATATTAATAGTATACTACAATTCATGTAAGAAATAAGGTAAAATAAGTAAATAGACAGTGTGTGGGTACAGACATATATATATAATATATATTATTATATATAAAATATATATTATATATATTATTATATATAAAATATATATAATAATATATATTTTACACATATACAAAATGTATATATATTTTATACATATACAAAATATATATATATTTTATACATATATGAAATATATATAATATATATAAAAATATATGTAATATATAAAAATAATATATATTTTATATATATACTTATTTTTATAAGAAGAAACACAAGAAGGAAGGTTTAATGAAAATAATGGCCAGGCGTGGTGGCTCACACCTGTAATCTCAGCACTTTGGGAGGCCAAGGCAAGAGGATTGCTTGAACCCAGGAGTTCAGGACCAGCCTGGGCAATGCAGGGAGACCCTGTCTCTACAAAAAATTTAGCTGGGCATAATGATGCACACCCATGGTCCCGGCTACTCTGGAGGCCCAGGTGGGAGGATTGCTTGAGCCCAGGGGTTGAGGCTGCAGTTGTAGTGAGCTGTGATCATGCCACTGCATGCTGGCACAGGCAGAAAAGTGAGAGCCTATTTAAAAAAAAAAAAAAGAAAATCATGAAGTTAGTTTCTTATAGTGAGTGGAAGGTAACAGGGTGGAAGGGATGTGGGAGAGAGTCTCACTTGTCTGTGTATACCTTTTTGTCTAGTTTTGACCAATTGAATGTCATCAAACTTAAAAACTTTTGCTGTCCTTTCCTTCTTTACAG
Seq C2 exon
CACATCAGCCCTTCAAGCCAGACCTAATATCCCAGCTGGAGAGAGAAGAAAAGCTTTTGATGGTGGAGACAGAAACCCCAAGAGATGGATGTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000062370-ZFP112:NM_001083335:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.303
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)