MmuINT0178583 @ mm9
Intron Retention
Gene
ENSMUSG00000052675 | Zfp112
Description
zinc finger protein 112 [Source:MGI Symbol;Acc:MGI:1929115]
Coordinates
chr7:24907253-24909033:+
Coord C1 exon
chr7:24907253-24907379
Coord A exon
chr7:24907380-24908937
Coord C2 exon
chr7:24908938-24909033
Length
1558 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGG
5' ss Score
6.74
3' ss Seq
TTTTTTTTTTTTTTACATAGCAC
3' ss Score
8.27
Exon sequences
Seq C1 exon
GAGATGGTGACCTTCAGGGATGTGGCTGTGGTCTTCAGCGAGGAGGAGCTGGGGCTGCTGGACGCTGCCCAGTGGAAGCTGTACCGAGAGGTGATGCTGGAGAACTTCAGGATGCTGCTCTCAGTGG
Seq A exon
GTGAGGACTGGGAGCTTGGGAGCACCTTAAGTTACTCTCTGTGCTTGGCTGTCTGGTTGGAAGCACGGAAGGTTCTCATGGCTCCTTCCAGGCAAACTCTGTCTTTGTGTCTCTGTGTATGGAAGTCCTGTTTGGTTTGTTGTTGTTGTTATTGTTGTTGTTGCCAGCTTGACACAAGCTAGAGTAGTGTGGGAGGAGAAACCTCACTTGAAAAAATGCACCTATCAAAATGGCTGGCCTATAGGCAAGCCTAGGTGGCATTTCCTTCATTAGTTACTGCTACTAAAGGGCCCAGCCCACTGTGGGCAGTGCCACCCCTGAGCCACCTCTGTGAGTGGCATAAGGAGGCAAGCTGAGCAAGTTATAAGGAACAAGCCATTGAGCAGCATCCCTCCATGGCTCTGCATTAGTCTCTACCTCCAGGTTCCTGCCGTGAGTTCCTGCCCTGGCTTCCCTTCATGATGGTCTATACACTGGAAGATGAAATAAACCCTTTCCTCCCCAAGTAGTCATCGTGTTTATTATGGCAACAGGAAGCAAACTAGGGCAGTGGGCACACTGGGCCCTTCAGCATTGGTTTATGGAAACCCATTCAGCATGTTGCCCAGCTTGCTTTGTTTTATAGGACGTCTAGCAGTGACTATTTGCCTAGAGGGCAAGCCTCTAGGAGTTGTTTTAAAAATATATTTAGTGTGTGTTGTAGTTAGGGTTTTACTGCTGTGAACAGACACCATGACCAAGGCAACTCTTATAAGGGAAAACATTTAATTGGGGCTGGCTTACAGGTTCAGAGGTTCAGTCTAGTATCATCCAGGCAGGCATGGTGCAGGAGGAGCTGAGAGTTCTATATCTTGATCCGAAGACATCAAGAAGGTTGGCATCCTCAGGCAGCTAGGAAGAAGATCTCCAAGCCCACCCCCACAGTGACACACTTCCTCCAACAAGGCCACACCTCCTAACAGTGCCATTCCCTGGGCCAAGCATATTCAAACCACCACAGTGTGTGTGTGTGTCCCTGGGCCAAGCATATTCAAACCACCACAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAGCCTTGCATGTATGCCATGTGAATGCAGGTGCCCACAGAGGCCAGAGAGGGCATCAGATTTCCTAGAACTGGAGTTACAGGTAGTTGTGAACCACCATGTAGTTCTGGGAATCAAACCCTGAATCCTCTGGAAGAGTAGCCAGTGCTTTTTATTGCTGAACCATCTCTCCGGCTCTGTAGTCTTTTTTTTTTCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTTATATTTTTCTTTTTATTTGTTTTTGTTTCTTTGAGTCAGGGTCTCATATTGCCCAGGCTAGACTGTCTCAGACTTACTGTATAGCTGAGGATGACCTTGAACCTCTGCTGGTACGACAGACACACACCTCCATACCTAGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTAAGTCTAATTTTGACAAGGAAGACATCATCAAACTCTCGCTTTTTTTTTTTTTTTACATAG
Seq C2 exon
CACATCAGCCCTTCAAACCGGGTCTGATAGCCCAGCTGGAGAATGGAGAGCAGCTTTGGATGGTGGAGGCTGAAGCCCATGCAGGTGGGCTCTCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000052675-Zfp112:NM_021307:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.091
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATGGTGACCTTCAGGGATGT
R:
CCGAGAGCCCACCTGCAT
Band lengths:
222-1780
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: