MmuINT0178583 @ mm10
Intron Retention
Gene
ENSMUSG00000052675 | Zfp112
Description
zinc finger protein 112 [Source:MGI Symbol;Acc:MGI:1929115]
Coordinates
chr7:24122234-24124014:+
Coord C1 exon
chr7:24122234-24122360
Coord A exon
chr7:24122361-24123918
Coord C2 exon
chr7:24123919-24124014
Length
1558 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGG
5' ss Score
6.74
3' ss Seq
TTTTTTTTTTTTTTACATAGCAC
3' ss Score
8.27
Exon sequences
Seq C1 exon
GAGATGGTGACCTTCAGGGATGTGGCTGTGGTCTTCAGCGAGGAGGAGCTGGGGCTGCTGGACGCTGCCCAGTGGAAGCTGTACCGAGAGGTGATGCTGGAGAACTTCAGGATGCTGCTCTCAGTGG
Seq A exon
GTGAGGACTGGGAGCTTGGGAGCACCTTAAGTTACTCTCTGTGCTTGGCTGTCTGGTTGGAAGCACGGAAGGTTCTCATGGCTCCTTCCAGGCAAACTCTGTCTTTGTGTCTCTGTGTATGGAAGTCCTGTTTGGTTTGTTGTTGTTGTTATTGTTGTTGTTGCCAGCTTGACACAAGCTAGAGTAGTGTGGGAGGAGAAACCTCACTTGAAAAAATGCACCTATCAAAATGGCTGGCCTATAGGCAAGCCTAGGTGGCATTTCCTTCATTAGTTACTGCTACTAAAGGGCCCAGCCCACTGTGGGCAGTGCCACCCCTGAGCCACCTCTGTGAGTGGCATAAGGAGGCAAGCTGAGCAAGTTATAAGGAACAAGCCATTGAGCAGCATCCCTCCATGGCTCTGCATTAGTCTCTACCTCCAGGTTCCTGCCGTGAGTTCCTGCCCTGGCTTCCCTTCATGATGGTCTATACACTGGAAGATGAAATAAACCCTTTCCTCCCCAAGTAGTCATCGTGTTTATTATGGCAACAGGAAGCAAACTAGGGCAGTGGGCACACTGGGCCCTTCAGCATTGGTTTATGGAAACCCATTCAGCATGTTGCCCAGCTTGCTTTGTTTTATAGGACGTCTAGCAGTGACTATTTGCCTAGAGGGCAAGCCTCTAGGAGTTGTTTTAAAAATATATTTAGTGTGTGTTGTAGTTAGGGTTTTACTGCTGTGAACAGACACCATGACCAAGGCAACTCTTATAAGGGAAAACATTTAATTGGGGCTGGCTTACAGGTTCAGAGGTTCAGTCTAGTATCATCCAGGCAGGCATGGTGCAGGAGGAGCTGAGAGTTCTATATCTTGATCCGAAGACATCAAGAAGGTTGGCATCCTCAGGCAGCTAGGAAGAAGATCTCCAAGCCCACCCCCACAGTGACACACTTCCTCCAACAAGGCCACACCTCCTAACAGTGCCATTCCCTGGGCCAAGCATATTCAAACCACCACAGTGTGTGTGTGTGTCCCTGGGCCAAGCATATTCAAACCACCACAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAGCCTTGCATGTATGCCATGTGAATGCAGGTGCCCACAGAGGCCAGAGAGGGCATCAGATTTCCTAGAACTGGAGTTACAGGTAGTTGTGAACCACCATGTAGTTCTGGGAATCAAACCCTGAATCCTCTGGAAGAGTAGCCAGTGCTTTTTATTGCTGAACCATCTCTCCGGCTCTGTAGTCTTTTTTTTTTCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTTATATTTTTCTTTTTATTTGTTTTTGTTTCTTTGAGTCAGGGTCTCATATTGCCCAGGCTAGACTGTCTCAGACTTACTGTATAGCTGAGGATGACCTTGAACCTCTGCTGGTACGACAGACACACACCTCCATACCTAGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTAAGTCTAATTTTGACAAGGAAGACATCATCAAACTCTCGCTTTTTTTTTTTTTTTACATAG
Seq C2 exon
CACATCAGCCCTTCAAACCGGGTCTGATAGCCCAGCTGGAGAATGGAGAGCAGCTTTGGATGGTGGAGGCTGAAGCCCATGCAGGTGGGCTCTCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000052675:ENSMUST00000005413:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.088
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATGGTGACCTTCAGGGATGT
R:
CCGAGAGCCCACCTGCAT
Band lengths:
222-1780
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types