BtaINT0165522 @ bosTau6
Intron Retention
Gene
ENSBTAG00000026263 | ZNF45
Description
Bos taurus zinc finger protein 45 (ZNF45), mRNA. [Source:RefSeq mRNA;Acc:NM_001076213]
Coordinates
chr18:52440227-52441508:+
Coord C1 exon
chr18:52440227-52440353
Coord A exon
chr18:52440354-52441412
Coord C2 exon
chr18:52441413-52441508
Length
1059 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGG
5' ss Score
6.74
3' ss Seq
TTGTCCTTGCCTTTTTACAGGGC
3' ss Score
10.31
Exon sequences
Seq C1 exon
GAGGCAGTGACCTTCAAGGATGTGGCCGTGGTCTTCACAGAGGAGGAGATGGGGCTGCTGGACTTGGCCCAGAGGAAGCTGTACCAGGAAGTGATGCTGGAGAACTTCCGGAACCTGCTCTCAGTGG
Seq A exon
GTGAGGACGGGTGCCCTCTGTAACTGAACAGAGACCCCTGCAATATTTATGTGCCCTTGAACAGGCAGAGCTTCGGAGCTCTTGGACCAAATTTCGGTTTTGTAATCAGCATGAGATGCAGAGATCGCAGGGCTTTTTGTTTGTTAGTTTGTTTTAATATTTATTTATTTATTTGGCCGCATCAGGTCTTAGTTGAGGTGCACGGGGTCTTGTTGCTTCATGCAGGATCTTTCATTGAAGTGCACGTTCTCTAGTTGCAGTGCATTGGCTTAGTTGCCCCATGGCGTGTGGGAACTTAGCTCCCTGACCAGGGACTAAACCTGCACCCCTGCATTGGAAGGCAGATTCGTAACCACTGGACCGCCAGGGAAGTCCCACAGAAATAGTGTTTTTCTTTCTCTGCTGACCAAAAGGTGTTTGTAAACATACTATAAATTGTCCGCATGATTGCTCTACCTTTTTGGCTTTTCAAATTGTAATCATCTCCAATTAGTGGGTCATGACATTCTTTAAGGAATTGAAATAAAATAGGGTAGAAAATATCACAGCATTTGGCAGTAACTGCACAATGCGATAAAAACTATGGCCTGTTGCCAAGAAGAGTATGAGAAATGGTGAAAAGGGTGTAATGAAAATAATGTCTTCCAGTAATTTATACTTAGTCTACATATCCTGGGGGCTTCCCAAGTGGCTCAGTGGTAAAGAATCCACCTGCAATGCAGGAGATATGGGTTTCATCCTTGGTCGGGAAGATCTCCTGGAGAAGCAAATGGCAACCTACTGCAGTATTCTTGCCTGGAAGGTCCCATGGACAGAGGAGCCTGGTGGGCTACAGTCTATGCGGTCTCAAGAGTTGGACATGACTTAGCAACTAAACAGCAACAGCAATGACTACACATCCTCGATTTTGCATAAAATATATTTCTGCCAATGGGTCATAATTGAAAGCTTGGAAAACACTGATTTTGATGTCAGTGTTGATATAGTGTAAACCACCATTTTTCACAATTTGGGCTTCTAATACATTCATTTTCAATGTTTGTCCTTGCCTTTTTACAG
Seq C2 exon
GGCATCAATCCTTCACACCAGATGTACCATCCCAATTAGAGAGAGAAGAAAAGCTGCAAATGATAAGGACAGCAGCCCAGAGCTGCTGTTCCTCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000026263:ENSBTAT00000043746:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.061
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGCAGTGACCTTCAAGGATG
R:
CCGAGGAACAGCAGCTCT
Band lengths:
222-1281
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development