HsaINT0186493 @ hg38
Intron Retention
Gene
ENSG00000267680 | ZNF224
Description
zinc finger protein 224 [Source:HGNC Symbol;Acc:HGNC:13017]
Coordinates
chr19:44100801-44101225:+
Coord C1 exon
chr19:44100801-44100927
Coord A exon
chr19:44100928-44101132
Coord C2 exon
chr19:44101133-44101225
Length
205 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGG
5' ss Score
6.74
3' ss Seq
GTAAGTTTGCCTGTTTGCAGGAC
3' ss Score
6.59
Exon sequences
Seq C1 exon
GAGGCAATGACCTTCAAGGACGTGGCTGTGGTCTTCACTGAGGAAGAGCTGGGGCTGCTGGACCTTGCTCAGAGGAAGCTGTATCGAGATGTGATGCTGGAGAACTTCAGGAACCTGCTCTCAGTGG
Seq A exon
GTGAGGACAGGCACCCTCTGTAACAGAACGTCAGGCCCCAGAGGTGGCTTTGTATCCTAGGGTACAAAGTTTCAAGTCTTAATTAGTAACTTGAACCTATGGTTCAAGTTTGAGTGTGCAGTAAGAACCTAAATTTCTGGTAAACTTTACCTTGATATTACCTAGAATGTGTTGGGATTAAGCATGTAAGTTTGCCTGTTTGCAG
Seq C2 exon
GACATCAAGCATTCCACAGGGATACTTTCCACTTCCTAAGGGAAGAAAAGATTTGGATGATGAAGACAGCAATCCAAAGGGAAGGGAATTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000267680:ENST00000336976:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.097
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGCAATGACCTTCAAGGACG
R:
CTGAATTCCCTTCCCTTTGGA
Band lengths:
220-425
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains