HsaINT0186582 @ hg19
Intron Retention
Gene
ENSG00000175395 | ZNF25
Description
zinc finger protein 25 [Source:HGNC Symbol;Acc:13043]
Coordinates
chr10:38260636-38265453:-
Coord C1 exon
chr10:38265434-38265453
Coord A exon
chr10:38260736-38265433
Coord C2 exon
chr10:38260636-38260735
Length
4698 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
3' ss Seq
TGTATGGAAATTTCTCACAGGTG
3' ss Score
5.7
Exon sequences
Seq C1 exon
CAGAGGCCGAGACCCTGCAG
Seq A exon
GTGTGTCGAAGGCTTTTGCGGGCGGGCAGGGCCTGGGAGGCGGGGTCTCGAGCCTGGAAGCCGCCTCCTGGCCCCGGAGCGGCCTCCGCGGAGGGCCCTGGGTGGGAGCCGCCTGGTGGGGAGGTTGGCTGGCTGCGCTGGCGCCCCTGCCCGGAATGGCGTTTGCGCGACCTGCTTGAGGGGCGGCCAGAGGAGGCCTGCGGTGCTGGGCAGTGGGCGCCCGGAGCAGCCGCATTGTGTGACGTGACCGGAGCCGCCATGTGAGGCGCGCTGGCCGCTGCAGACGCGGCGCTCCAAAGCCGCAGGGACGTGGGCTCTGGTCCAGCGTCTGTAGGTGGTCCCAGTGCGGCTCGACGCGCATCTGGCAAATGATGGGGGCCTTTGGGTACTGAATAGGGTAATAGATGTAAAGTATGATACAGGACTCAATAAAGGTGAGCTGCTTCTATTATTACAAAACATGCTGTTTTCATTATTGGCTCATTTAATCATCGTAACCATCCTTTCGACTTAACCATCTCTATTAAAATAAATGTGACTATTAAAGATTCAGAGAGAGAAATCCGTTTACCCACAGTATTAGCAGGTGGGATGTAAATCCTCACTTTTTCCTCTGAGTTAATGCGCCTTGCCACACTAAAATCCAGTCTTGACTTGTATTTAGCACAGCATTTGCCCCTTGAGCACCACCAGAACGTAGCTGTGTGGTGTACTTGAACCCAGTCTCAACCAGGTAGTGTTCTGTTTCCAAAAATGCTTGGGGAATCTTCAGAGCACTTGAGTCAAAAGGTGAATTATTTAAGGCCTTCCTGCATCCTCCAACCTTAGTCTCTTCTCAGAGGACTGTGAAACGTGTAAATTGAAACCACAATTTGAGCCCTCAATTTTGCATTTTACAGGAGAAGCTGGGAATCCCATCCAGCCCAGAGGCTAGTTTCTAAAGACAGGAAATGGGACAAAAAATTTTTTTAAAGATGAAAACTGCAGTTCATCAGTTCCTCCATTTTATGGTGGTGATCTTATAATGCCTCTCATTGGCTGATAACTGAGCTTAGGCATTTCGTAAGCACCATGCTAGCTGGAAGTGGTTTTTGCTGCTTATTTTAGTTTTTTTTTTTGGTACATAATGTACATATTTGTGGGGTACATGTGATATTTTGATATATGCATACAATGTGTCATGATCAAATCGGGGTAATTACAATATCCACCGCCTCATTTATCATTTCTTTGTGTTGCAAATATTCGAAATCTTCTAGCTATTCTGATAGCTAATAAATTATTGCTAACACTTGTAACCATACTGTGCTATTGAACACTAGGACTTAATCCTTCTACCTAACTGTATTTTTGTACCCATTAACCAACCTCTCTTCATTCCTCACTCCCTACTTCCCTTCGCAGCCTCTGGTAACCATCATTCTACATCGTATCTTCATGAGATCAACTATCTTAGCTCCTGCGTATGAGTGAGAACATGATATTTGTCTTTCTGTGCCTGGCTTATTTCATGTAACATAATGCCCTCCAGTTCCATCTTTGTTGCTGCAATGACAAAATTTCCTTCTTTTTATGTCTGAATAATATTCCATTGTGTATATATACCACAATTTTCATTATCTATTCATGCATTGATGGGTACTTAGGTGGATTCTGTATCTAGACTATTGTGAATAGTGCTGCGATAAAAATGGGAGTGCAGAGATATCTTCAATATACGGATTTCCCTTCTTTTGGATATATATATAGCAGTGAGATTGCTAGATCATATGGTAATTCTGTTTTCAATTTTTTGAGGAACCTCCATACTGTTTTCCACAGTGGCTGTACTAGTTTACATTGCCACCAAGGTTGTATGAGGGTTCTCCTTTCTCTATATCCCAGCATTTGTTATTTTTTTGCCTTTTTTATAATAGCTGTTTTAAGGGGTAAAATGATATCCCATTATGGTTTTGATTTGCATTTGTCTGATGATTAATGATGTTGAAGATTTTATCGTATACCTATTGGCCATTTGTATGTCTTCTATTGTGGAATGTCTGTTCAGATCATTTGCTCAATTTTTTTAAATCAAATTTTTTGTTTTCTGACTGTTGAGTTCCTTGTATATTCTGGTTATTAATTCCTTGTCAGATGGGTAGTTTGCAAATATTTTCTCCTATTCTTTGGGTGTCTTTTCACTGTTATTGCTTACTTTGCTGTGCTGAAACTTTTTCGTTTGATGTAATCCCATTCATCTATTTTTGCCTTTGTTGCTTGTGCTTTTGAGGTCTTACCAAAAAATTTTTGCCGAGAACAATGTTCTGAAGCATTTCCAAATGTTTTCTTCAAGTAGTTTCATAGTTTCAGGTCATACATTTAACTCTTTAATCCACTATCATTTGATTTTTGCATATGATGAGAGACAGGGGTTTAGTTTCATTCTTCTGCGTATGGATATCCAGTTTTCTCAGCACCATTTATTGAAGAAACTGTCATTTCTCCAATGTATGTTCTTAGTGCCTTTGTCAAAAATGAAATTGGCTATAAATGCATGTATTTATTTCTCAATTCTCTTTTTCATTGATCTATGTGTCTCTTTTTATGCCAGTAACCTACTGTTTTGTTTACTATAGCTTTATAGTATATTTTGAAGTCTGGTAGTACAATGCCTCCACCTTTGTTCTTTTTGCACAAAATTGCTTTGGCTACTCGGGGTCTTTGGTGGTTCCATATAAATTTTAGGATTTTTTTTCCTATTTCTGTGAAGAATGTCATTGGTATTTGGATATGGATTGCATTTAATCTGTAGACTGCTTTTAGTACTATGGACATTTTAACAATATTAATTCTGCCAGTCCATGAGCATGGGATATCTTTCCATTTTAATATCATTCATCAGTGTTTTATACTCTTTTTTTTTTTTTTTTGAGACAAGGGCTCAGTTTGGTGCAATCTTGGCTCACTGCAACCTCTGTCTCCCAGGGTCAAGCGATTCTCCTGCCTCAACCTCCCGAGTAGCTGGGATTATAGGAGTGCACCACCATACCTGTGTAATTTTTTTTGTATTTTTAGTGGAGACAGGGTTTTGCCACATTGGCCAGTCTGATTTTGAACTCCTGACCTCAGGTGATCCACCTGCCTACACCTCCCAAAGTGTTGGGATTACAGGTGTGAGCCACAGTGCCCAGCCTGTTTTATACTTTTAATCATAGGATCTTTTACATTTTTGGTTAAATTTATTCCTAGGTGTTGGGGTTTTTTTGGTAGCTGTTGTAAATGGGATTGCTTTCTTGATTTGTTTTTCAGATTGTTCACTGTTGGTGTATGGAAATGCTACTGATTTTTTTTTTTTTTTGAGATAGAGTTTTGCTCTTGTTGCCTAGGCTGGAGTGCAGTGGCATGATCTTGGCTCACTGCAACCTCCGCCTCCTGGATTCAAGCAATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGATTACAGGCATGCGCCACCACACCTGGCTAATTTTGTACTTTTAGTAGTGACTGGTTTTTCTCCCTGTTGGTCAGGCTGGTCTTGAACTCCCAACCTCAGGTGATTCACCCACCTTGGCCTCCCAAAATGCTGGGATTACAGGCGTGAGCCACCGTGCCTGGCCTGCTACTGGTTTTCTAATGTTGATTTTGTATCCTGCAGCTTTACTGAGTTCATGTATCAGTTCTACCAGTTTTTTCGGTGGAGTCTTTATGTTTTTCTAAATATAGGGTCATGTCATCTGTGAACAAAGATAATTTGATTTTTTCTTTCCAATTTGGATGCCCTGCATGGTTTCTGCTGCTTATGAAAAGGACCTTAGGATTATGACGTAGTTGCCTTTTGCTACCTATATGAAGTGCTTGTTTGAGAATTATGATGATTAACTGTTATTTTAGAAGGTAGATTTGTGTCACTGTCAGCAGATTAGATTCTCAAGTCAGAGTTCATCAGGGCCTAATTAAATTTTACCTTAGGCCCAGCCCAAGTTTTGAGGGCACAGTGCATTGCAGGTACTGTCTGTATTGGTGATCCTGGGTGAAGATATATAGAAGTAGAATGGTACATGAAGGGTTGTGCAAGATTATCTAATTCCTACTCATTTTGAAGACAAAAGCATTGAAACTAAGACAATCACTAAGTTTATTAATAGCAGAGCCTAGAGTAGAACTGAGTCTTTAAGTTCATTATATCATATTTATATCAAAAGAAGGTTCTTGGAGAAATGGTTTCTGAGAAACTGCAATTTAGGGAGAAGAAATGTCTTATGTTTGAGAACTTTGAAAATTCAGACTTTCTAACCTTGGGTTTATAATAGAAAAAAATGGTTATGATATGTAACTTAATTACCTTTTATGTGCCAATAAATATATCTCTTCAACATCATTTCTAGTGTCAGCAAAGGGCTCCATACTTTGGATATATTATACATGTTATTTAATCAGTCATTATTGGATATTTAAGTTTTCGATTCTTTTGTGTTATTCAGAAAACAGAAACATAATTTTCAAAGCAACCAATAGGAAAGAAATGTGTAGATTCACTAAAAAATGTCCCAGGCTCATCAACATTAATATCAGAGTCAGAAGTGGACAGGTGGGTGCTACTTCATCATGGTCCTTACTATGCTTTCTAATGGGTCAAAGGGACATTTTCTCAAAGGTATATATTTTACTAAAATGTTGTATGGAAATTTCTCACAG
Seq C2 exon
GTGATTCCTGGGGCTGCCAGCTAAGGTCCCTTATGATTTCTGCTCTGGCTTTGCAGTTTTCAGCCTTTCCCAAGAGCAGCAGAAAATGAACAAGTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000175395-ZNF25:NM_145011:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.167
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)