HsaINT0186582 @ hg38
Intron Retention
Gene
ENSG00000175395 | ZNF25
Description
zinc finger protein 25 [Source:HGNC Symbol;Acc:HGNC:13043]
Coordinates
chr10:37971708-37976633:-
Coord C1 exon
chr10:37976506-37976633
Coord A exon
chr10:37971808-37976505
Coord C2 exon
chr10:37971708-37971807
Length
4698 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
3' ss Seq
TGTATGGAAATTTCTCACAGGTG
3' ss Score
5.7
Exon sequences
Seq C1 exon
ATTGGCGTTTTTTTGGTCTTACGCCCTAGGGTGGGGAGAGGACTCCGGTGCCTCCGGGTCTGGGCTGGGCCGCAAAGGGCGGGGCCTGGGCCCGGCGCGGGCCGGGAGCAGAGGCCGAGACCCTGCAG
Seq A exon
GTGTGTCGAAGGCTTTTGCGGGCGGGCAGGGCCTGGGAGGCGGGGTCTCGAGCCTGGAAGCCGCCTCCTGGCCCCGGAGCGGCCTCCGCGGAGGGCCCTGGGTGGGAGCCGCCTGGTGGGGAGGTTGGCTGGCTGCGCTGGCGCCCCTGCCCGGAATGGCGTTTGCGCGACCTGCTTGAGGGGCGGCCAGAGGAGGCCTGCGGTGCTGGGCAGTGGGCGCCCGGAGCAGCCGCATTGTGTGACGTGACCGGAGCCGCCATGTGAGGCGCGCTGGCCGCTGCAGACGCGGCGCTCCAAAGCCGCAGGGACGTGGGCTCTGGTCCAGCGTCTGTAGGTGGTCCCAGTGCGGCTCGACGCGCATCTGGCAAATGATGGGGGCCTTTGGGTACTGAATAGGGTAATAGATGTAAAGTATGATACAGGACTCAATAAAGGTGAGCTGCTTCTATTATTACAAAACATGCTGTTTTCATTATTGGCTCATTTAATCATCGTAACCATCCTTTCGACTTAACCATCTCTATTAAAATAAATGTGACTATTAAAGATTCAGAGAGAGAAATCCGTTTACCCACAGTATTAGCAGGTGGGATGTAAATCCTCACTTTTTCCTCTGAGTTAATGCGCCTTGCCACACTAAAATCCAGTCTTGACTTGTATTTAGCACAGCATTTGCCCCTTGAGCACCACCAGAACGTAGCTGTGTGGTGTACTTGAACCCAGTCTCAACCAGGTAGTGTTCTGTTTCCAAAAATGCTTGGGGAATCTTCAGAGCACTTGAGTCAAAAGGTGAATTATTTAAGGCCTTCCTGCATCCTCCAACCTTAGTCTCTTCTCAGAGGACTGTGAAACGTGTAAATTGAAACCACAATTTGAGCCCTCAATTTTGCATTTTACAGGAGAAGCTGGGAATCCCATCCAGCCCAGAGGCTAGTTTCTAAAGACAGGAAATGGGACAAAAAATTTTTTTAAAGATGAAAACTGCAGTTCATCAGTTCCTCCATTTTATGGTGGTGATCTTATAATGCCTCTCATTGGCTGATAACTGAGCTTAGGCATTTCGTAAGCACCATGCTAGCTGGAAGTGGTTTTTGCTGCTTATTTTAGTTTTTTTTTTTGGTACATAATGTACATATTTGTGGGGTACATGTGATATTTTGATATATGCATACAATGTGTCATGATCAAATCGGGGTAATTACAATATCCACCGCCTCATTTATCATTTCTTTGTGTTGCAAATATTCGAAATCTTCTAGCTATTCTGATAGCTAATAAATTATTGCTAACACTTGTAACCATACTGTGCTATTGAACACTAGGACTTAATCCTTCTACCTAACTGTATTTTTGTACCCATTAACCAACCTCTCTTCATTCCTCACTCCCTACTTCCCTTCGCAGCCTCTGGTAACCATCATTCTACATCGTATCTTCATGAGATCAACTATCTTAGCTCCTGCGTATGAGTGAGAACATGATATTTGTCTTTCTGTGCCTGGCTTATTTCATGTAACATAATGCCCTCCAGTTCCATCTTTGTTGCTGCAATGACAAAATTTCCTTCTTTTTATGTCTGAATAATATTCCATTGTGTATATATACCACAATTTTCATTATCTATTCATGCATTGATGGGTACTTAGGTGGATTCTGTATCTAGACTATTGTGAATAGTGCTGCGATAAAAATGGGAGTGCAGAGATATCTTCAATATACGGATTTCCCTTCTTTTGGATATATATATAGCAGTGAGATTGCTAGATCATATGGTAATTCTGTTTTCAATTTTTTGAGGAACCTCCATACTGTTTTCCACAGTGGCTGTACTAGTTTACATTGCCACCAAGGTTGTATGAGGGTTCTCCTTTCTCTATATCCCAGCATTTGTTATTTTTTTGCCTTTTTTATAATAGCTGTTTTAAGGGGTAAAATGATATCCCATTATGGTTTTGATTTGCATTTGTCTGATGATTAATGATGTTGAAGATTTTATCGTATACCTATTGGCCATTTGTATGTCTTCTATTGTGGAATGTCTGTTCAGATCATTTGCTCAATTTTTTTAAATCAAATTTTTTGTTTTCTGACTGTTGAGTTCCTTGTATATTCTGGTTATTAATTCCTTGTCAGATGGGTAGTTTGCAAATATTTTCTCCTATTCTTTGGGTGTCTTTTCACTGTTATTGCTTACTTTGCTGTGCTGAAACTTTTTCGTTTGATGTAATCCCATTCATCTATTTTTGCCTTTGTTGCTTGTGCTTTTGAGGTCTTACCAAAAAATTTTTGCCGAGAACAATGTTCTGAAGCATTTCCAAATGTTTTCTTCAAGTAGTTTCATAGTTTCAGGTCATACATTTAACTCTTTAATCCACTATCATTTGATTTTTGCATATGATGAGAGACAGGGGTTTAGTTTCATTCTTCTGCGTATGGATATCCAGTTTTCTCAGCACCATTTATTGAAGAAACTGTCATTTCTCCAATGTATGTTCTTAGTGCCTTTGTCAAAAATGAAATTGGCTATAAATGCATGTATTTATTTCTCAATTCTCTTTTTCATTGATCTATGTGTCTCTTTTTATGCCAGTAACCTACTGTTTTGTTTACTATAGCTTTATAGTATATTTTGAAGTCTGGTAGTACAATGCCTCCACCTTTGTTCTTTTTGCACAAAATTGCTTTGGCTACTCGGGGTCTTTGGTGGTTCCATATAAATTTTAGGATTTTTTTTCCTATTTCTGTGAAGAATGTCATTGGTATTTGGATATGGATTGCATTTAATCTGTAGACTGCTTTTAGTACTATGGACATTTTAACAATATTAATTCTGCCAGTCCATGAGCATGGGATATCTTTCCATTTTAATATCATTCATCAGTGTTTTATACTCTTTTTTTTTTTTTTTTGAGACAAGGGCTCAGTTTGGTGCAATCTTGGCTCACTGCAACCTCTGTCTCCCAGGGTCAAGCGATTCTCCTGCCTCAACCTCCCGAGTAGCTGGGATTATAGGAGTGCACCACCATACCTGTGTAATTTTTTTTGTATTTTTAGTGGAGACAGGGTTTTGCCACATTGGCCAGTCTGATTTTGAACTCCTGACCTCAGGTGATCCACCTGCCTACACCTCCCAAAGTGTTGGGATTACAGGTGTGAGCCACAGTGCCCAGCCTGTTTTATACTTTTAATCATAGGATCTTTTACATTTTTGGTTAAATTTATTCCTAGGTGTTGGGGTTTTTTTGGTAGCTGTTGTAAATGGGATTGCTTTCTTGATTTGTTTTTCAGATTGTTCACTGTTGGTGTATGGAAATGCTACTGATTTTTTTTTTTTTTTGAGATAGAGTTTTGCTCTTGTTGCCTAGGCTGGAGTGCAGTGGCATGATCTTGGCTCACTGCAACCTCCGCCTCCTGGATTCAAGCAATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGATTACAGGCATGCGCCACCACACCTGGCTAATTTTGTACTTTTAGTAGTGACTGGTTTTTCTCCCTGTTGGTCAGGCTGGTCTTGAACTCCCAACCTCAGGTGATTCACCCACCTTGGCCTCCCAAAATGCTGGGATTACAGGCGTGAGCCACCGTGCCTGGCCTGCTACTGGTTTTCTAATGTTGATTTTGTATCCTGCAGCTTTACTGAGTTCATGTATCAGTTCTACCAGTTTTTTCGGTGGAGTCTTTATGTTTTTCTAAATATAGGGTCATGTCATCTGTGAACAAAGATAATTTGATTTTTTCTTTCCAATTTGGATGCCCTGCATGGTTTCTGCTGCTTATGAAAAGGACCTTAGGATTATGACGTAGTTGCCTTTTGCTACCTATATGAAGTGCTTGTTTGAGAATTATGATGATTAACTGTTATTTTAGAAGGTAGATTTGTGTCACTGTCAGCAGATTAGATTCTCAAGTCAGAGTTCATCAGGGCCTAATTAAATTTTACCTTAGGCCCAGCCCAAGTTTTGAGGGCACAGTGCATTGCAGGTACTGTCTGTATTGGTGATCCTGGGTGAAGATATATAGAAGTAGAATGGTACATGAAGGGTTGTGCAAGATTATCTAATTCCTACTCATTTTGAAGACAAAAGCATTGAAACTAAGACAATCACTAAGTTTATTAATAGCAGAGCCTAGAGTAGAACTGAGTCTTTAAGTTCATTATATCATATTTATATCAAAAGAAGGTTCTTGGAGAAATGGTTTCTGAGAAACTGCAATTTAGGGAGAAGAAATGTCTTATGTTTGAGAACTTTGAAAATTCAGACTTTCTAACCTTGGGTTTATAATAGAAAAAAATGGTTATGATATGTAACTTAATTACCTTTTATGTGCCAATAAATATATCTCTTCAACATCATTTCTAGTGTCAGCAAAGGGCTCCATACTTTGGATATATTATACATGTTATTTAATCAGTCATTATTGGATATTTAAGTTTTCGATTCTTTTGTGTTATTCAGAAAACAGAAACATAATTTTCAAAGCAACCAATAGGAAAGAAATGTGTAGATTCACTAAAAAATGTCCCAGGCTCATCAACATTAATATCAGAGTCAGAAGTGGACAGGTGGGTGCTACTTCATCATGGTCCTTACTATGCTTTCTAATGGGTCAAAGGGACATTTTCTCAAAGGTATATATTTTACTAAAATGTTGTATGGAAATTTCTCACAG
Seq C2 exon
GTGATTCCTGGGGCTGCCAGCTAAGGTCCCTTATGATTTCTGCTCTGGCTTTGCAGTTTTCAGCCTTTCCCAAGAGCAGCAGAAAATGAACAAGTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000175395:ENST00000302609:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.143
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains