MmuINT0180032 @ mm9
Intron Retention
Gene
ENSMUSG00000072623 | Zfp9
Description
zinc finger protein 9 [Source:MGI Symbol;Acc:MGI:99210]
Coordinates
chr6:118427325-118429291:-
Coord C1 exon
chr6:118429224-118429291
Coord A exon
chr6:118427443-118429223
Coord C2 exon
chr6:118427325-118427442
Length
1781 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
3' ss Seq
TGTCTCTAACTTTCTCACAGGAG
3' ss Score
9.1
Exon sequences
Seq C1 exon
GCCACGTCGGCGTCCTCCCGCTTCTCAGCCATCCCCGGGCATCTGCAGCGGAGGCCGCTGTCACCGAG
Seq A exon
GTGAGAATCGCTCAGGGCGCACGGAGCAGGGCAGTCTTGCAGAGTGCTGTGGAACAAGCAGGGCGGGCTGCTGCTTTTCCAGCAGAGCCAGGTCCTTTCATCTGGGCCCCTCAAAGCTGTTCACAGAGGCTGTTTGGTTTACCCAGTACCTGCGGGTGGTCGTAATCCTCTATTGTTTAACTCTGCCGGGCTTGTCTCTTCCACGCAGTCCTGTCTGCGTCTGCTTTCCGTGCAGCCGCTGAGGACACAGCCTTGAAGCATACTTGATCATACCTGGAGTCTTCTATTCCTAAAACTCCTCCAGCCTCCTCTGGATCCCTTAGTGTGAGAGATTAATTAAGGCTCTCCCTCCCCATATCCCTCAGCTATCCTTTGTTAGACTGTTGAACAGTTATTTGGAAGTACAGTATTGCTTTTTAAAAAAAGGTCTTTCAGTATTAAATTTTCCTGAGAATCTGGGAATTATATACACTCACCCTCTAAGGGAATAGAAGTAAAACAGATTGGGGGTGGGGTGTCGATCTGGCCTTGGAGCTCCAGACTAGTTTGGAGCTGTTGAAACTCCTGCCTCAGCCTCCAGGATGCTGGGTTTACAGGTGTGTGCCACCCCGTCCAGCAGAGACAGATCTAAAAGATGAGAACTGTTGTTCATTTGTGTTCTCTGTTACGAAGGAGATTTCCTAAGGCTGATGATTGGCGCATTTGTATCTGGCCTTATACATTAGGCCTTTGGTATGCACCCGGCTGACTGGAATTAAGCATTTGGTTTTTTGTTTGTTTGTTTTTGTTTTTAATCTATATACACGATATACCTTTTTAGGGAATATGGTACTAAAACTGTTGTCTAATTAATTAATGACTTTATTTATGTATTTATTTGAAATAATGTCTCACTATGTAGTCCAAGCTGGTCTAGCTCTCGTTCTATAGCTTAAACCAGCCTTAATCTTGCTATCTGCCTGCCTCGGCCTTTACAGTGCTGGGGCTAGAAGTGTGCCTCACTCCATGTGGCTTCAAATTGCTATTTTTGAAGGTAATTTTGTTTCAAAGCTTCATTTGTTTCAAAGCTAGATTTGGCAGCCATGCAACAGTTCATTAAGATGTAATTTAATTTCACCCCACCCCCCTGTTTCAGCCTGTTTTGAGAGGCCAGTCAATTACAGGGATCTAAACCTGTTGTGTGGCTGTCAAGGCTTGACCGGAGGCTGCACAGAGGGTTATTCACCATGATTTAATTCCTTTCACTTTAAGAATAATAGCATTGAAACTAAGTCCCAATGCCGGTAGCAGACATAGCAACAGAACCAAAAGGAATCATATATAAGAGAAAATGGATCACATGTAAGGTTCTTGAAGAAGTGCTCCGTTTTCTTTTTGCTTTGAGAAACTGTAATTTAGGGAGAAGAAATGCCTGGTATTTGAAAGCTTTAAGATGACTTTCTAGCTTTGGAGGAATGTAATATTAACAGAAAAAAAATGTTACTTCCAATATAAACAGCCAAGGTCCCCTGTTTGCATATGTTACAGTTCCTTTGAAATGAATCTGTTCTTTGGTGTTTACAGGTTGGGTGCTTTTATCTTAGTCAGTAAGCAGACAGATGCTTTTCAAACAGACAGTAGAAATGTTTAGATTTAGTCAAAGACAAACACGCCCCAGGCTCATCAGGATGGGGAGAAGGCTCAATAGAGAGGCCAGTAGTACTTCATCCTGGTCCCTCTGATTGGGTCAGGACAGCTTCTCAGTATACAGTACTAAAATGCTGTCTCTAACTTTCTCACAG
Seq C2 exon
GAGACCTGGAGCTGTGGCCTATGATTTCCTAGGACTTCACTCTCCCAACTTTAGAGGGTAGAACACCACCACTCCCCATCCCCGCTCTAAAACACTGCAGAAAATGACCAAGTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000072623-Zfp9:NM_011763:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: