HsaINT0186606 @ hg19
Intron Retention
Gene
ENSG00000152454 | ZNF256
Description
zinc finger protein 256 [Source:HGNC Symbol;Acc:13049]
Coordinates
chr19:58452201-58455428:-
Coord C1 exon
chr19:58455302-58455428
Coord A exon
chr19:58454016-58455301
Coord C2 exon
chr19:58452201-58454015
Length
1286 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
3' ss Seq
CAGCATTTTCTTTCTTTCAGGTG
3' ss Score
10.83
Exon sequences
Seq C1 exon
GGCATTGTGACCTTTGAGGACGTGGCTGTTTACTTCTCCTGGAAGGAGTGGGGTCTTCTTGATGAGGCTCAGAAATGCCTGTACCACGATGTGATGCTGGAGAACTTGACACTTACAACCTCCCTGG
Seq A exon
GTAAGGTCCTCACACCCACCTCTATGCCCCGAGCTAGCCTTTGCTCTTACCCTTTCCCCAGAGTCAGATGTGTCTTCACAAGAGGACTATTGACACAGCTTCCTGTTCCTGGGCAGGTGCTGCGGTTGGTAGGGCTAAGGTTGTATGTTGCCTGCTTTTCTCCTTGAGCAAGCAACACCTGCTTCCCTTTCATGTGGAAAGATTCAGAGTTAGGCTTCTTATAGTCGGCCTCATGGATCTCACCTCGTTTGCCTCTCCTGGCCAGGTGACATTGTCCAGATTCGAGGCTCCTCAAGGCCCAGGTTCTACTTCCTTCCTCTAGGGGACACTTCCTCATGCCTGCCTCTGCCAGCAATTATCATCACTGACATTGTCACCACTTATGTGGACTACGAGTGGCTCTTGCAAAATCCTCCTCTGAATTTCTCCTTGTATTATTATTTTTTTTCCTGTAGGCTATCATGTGCAGAGTCATTCTGGGCTGGTCTTGGGTGCTTGCATATTCCAAGTTCCGTGTTCTTGATTGTAGGGGTCAGATGGACAGGCCCTGTGGTTCTGAGGATGGCTGTGATTCCCCACAGCAAGATGGACTCAGAGGGAGCCTGGCCCTAGGGACTAACACCTAAAGGAGGACATTCTATAAGGGTTATGTTCACATCATACCAGAAACATATCCTGTTTGACTAATATTTTGGTGCTAATGACATTTGGGGCCAAACCTCATTACTGCCTTTTCTTTCCCATTCTTGATACTTAGCTTGCTTGTCAGCTGTCCACCTGGTTACTACGTCTCTTACTTCCAGCCTGGGGTTAATCCCCACATCTCTGGACTCCATGTTTCACCCATTTTTCTCACTGCCTTATCTGCAGTGCTCTTCAGTGTTGGCCTCTACATAATATGTTATGAGGTGTCCACGTATGTCAGCCGCTATTTTGTTGTCACATTTTCTTGGGCCTGGACACATACCTGTACACAATGCATGTGTTAGCAGGACAGCAGATCTCACTGAAAATTGTTCTAGAGGAATGAGTTGTATATCCTGCCTCTTCTCCATGTTTCTCATCCCATGGCTGTGTTTTTTAACTCATGAGCCCTTCCCAGTTCTGTGATCTTTAGAGGCCCAGTTCTGCTAGGCAGCCCTATCTTCAACTTGAACCCAACACCTTGGTCCTGAAAACAACCCCATGGACTCAGTTCCTGGGTTTGTTGGATGCACATTTGTCTGTGGGCTACCTCCACTCCACTAAAGTCAGCATGCTCTTCACCAGCATTTTCTTTCTTTCAG
Seq C2 exon
GTGGTTCTGGAGCAGGGGATGAGGAGGCACCTTATCAGCAGAGCACTTCTCCACAGCGGGTGTCACAGGTTAGGATTCCTAAGGCCCTTCCTTCTCCCCAGAAGACCAACCCCTGTGAGATATGTGGCCCAGTCTTGAGACAGATTTTGCACTTGGTTGAACACCAAGGAACACACCATGGTCAGAAACTGTATACAGACGGGGCATGTAGGAAACAATTACAATTTACTGCATACCTTCATCAGCACCAGAAGCAGCATGTTGGACAGAAACACTTCAGAAGCAATGGGGGCAGAGACATGTTTTTGAGCAGCTGCACATTTGAAGTATCTGGGAAGCCCTTCACTTGCAAGGAGGTTGGGAAGGATTTCCTGGTGAGATCAAGATTTCTTCAGCAACAGGCTGCTCACACCAGAAAGAAGTCAAACAGAACCAAGAGTGCAGTGGCCTTTCACAGTGTAAAAAATCATTACAACTGGGGAGAATGTGTGAAAGCTTTCAGCTACAAACATGTACGTGTTCAGCACCAGGGAGACCTCATTAGGGAAAGATCTTACATGTGCAGTGAATGTGGGAAATCTTTTAGCACAAGCTGTAGCCTCAGTGATCATTTGAGAGTTCACACTTCAGAAAAGCCTTATACATGTGGAGAATGTGGGAAATCCTATAGGCAAAGCTCTAGCCTTATTACGCACCGAAGAATTCACACTGGAGTAAGACCTCATCAATGTGATGAATGTGGAAAATTATTTAACAGGAAGTATGACCTTCTTATACATCAGAGAGTTCATACTGGAGAAAGGCCTTACAAGTGCAGTGAATGTGGGAAATCCTTTAGCCATAGCTCTAGCCTCATTACACACCAGAGAATTCATACTGGAATGAGGCCTTATGAGTGCAGTGAATGTGGGAAATCTTTTATCCATAGTTCTAGCCTTATTACACACCAGAGAGTTCACACTGGTACAAGGCCTTATATGTGCAGTGAATGTGGGAAATCCTTTAGCCAGAGCTGTCACCTCATTAAACACCGGAGACTTCACATTGGAGAAGGGCCTTATGAGTGTAGTGAATGTGGGAAATTGTTTACTTATAGATCTCGTTTCTTCCAACACCAGAGAGTTCATACTGGAGTAAGATCTCATGAATGTCATGAATGTGGAAAATTATTTAGCAGGAAATTTGACCTCATTGTACATGAGAGAGTTCACACAGGAGAAAGGCCATATGAGTGCAGTGAATGTGGAAAATCCTTTACCTGTAAATCCTACCTCATCTCACACTGGAAAGTTCATACTGGAGCAAGGCCTTATGAATGTGGGGAGTGTGGGAAATCATTTACTCATAGCTCTACGCTCCTTCAACACCAGAGAGTTCACACTGGAGAAAGGCCTTATGAGTGCAATGAATGTGGGAAGTTTTTTAGCCAGAGCTCCAGCCTCATTAGACATAGGAGAAGTCACACCGGAGAAAGGCCTTATGAGTGCAGTGAGTGTTGGAAATCCTTTAGTAACCACTCTAGCCTCGTTAAACACCGAAGAGTTCATACCGGAGAAAGGCCTTATGAATGCAGTGAATGTGGAAAATCCTTTAGCCAGAGCTCTAACCTCACTAATCACCAGCGAATTCACAGTGGGGAAAGGCCTTATGAGTGTAGTGACTGTGGAAAATTTTTTACCTTCAACTCCAACCTCCTAAAACATCAGAACGTTCACAAGGGATAAAGGTTAGGTAACACACATAGGGCTGTTACGGACTGAGAAGTGTCCCTGCAAAATTCACAGACATAAATAAATAAATACGTATTTTCAATAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000152454-ZNF256:NM_005773:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.023 A=NA C2=0.108
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0),PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.5),PF0013017=C1_1=WD(100=9.0),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGGTCTTCTTGATGAGGCT
R:
TCCAACATGCTGCTTCTGGTG
Band lengths:
345-1631
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)