HsaINT0186776 @ hg19
Intron Retention
Gene
NA
Description
NA
Coordinates
chr17:15602891-15603680:+
Coord C1 exon
chr17:15602891-15603091
Coord A exon
chr17:15603092-15603361
Coord C2 exon
chr17:15603362-15603680
Length
270 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
CCCAGCGTCACCTCTTCCAGGTG
3' ss Score
8.13
Exon sequences
Seq C1 exon
CTTCGATCGTCCGATTCTCCCAGCCGCACCACGGGTGCTCCCACCTGCGGAGAACCGGAGTCTGGCGATGCCAAGGCGCTTCTGGGAATTGTAGTTCCGGGCGGGATGAGGGCAGCACGCCTGGCTCCGCTCCTTCTTACGCATGCGCGACTCCGAGCTGGCCAAAGAAGTTCGTCCCCTTTGTGAGGCCCGGGATGGGAG
Seq A exon
GTGAGTTGCTTGTGGTGATGTCGCTCGTCTCGGCTCGGCCTCGGCGGTGGTTCCCCGGGTCGTTCTGTGCCGAGTCGGGGCTAGAGTGCGCGTTTGTTAAAGGGGCCTCGAGGGCAGACCATGAGCCCTGTCCCTTCTCACTCTGGCCTGATCCTCTCCTCGGGGGACGCGGTTGTGCCACGGGCGGGGTGGTCGCGGGGTTCTGGGCCAGTGCCCCGAGCGCGGCAGAATTTGTCCAAACTCCTGATGCCCCAGCGTCACCTCTTCCAG
Seq C2 exon
GTGCCCGGTTCCCCCAGGGACAGCTTCAAGCGGTAGGGACAGACATCTGAGGACCCAGCCTCAGGGATGCTGTCCCCGGGCTTCCAGGCTCCAGCGCCGTAGGACTGAGGCAGACTCCACGGTGAGAAAGAGACCCGATCTAACCCAGGCCTTTCATCAGAGCCCAGGAGGGAAGGCAGGAAGTGGGACCACGAGGCCCGGGGGGCTTCTAACTCGTCTGGCCAGGGAGATCTGAATTGGGGTGAAGAGCAGAATCTCCAGAACAAGGAGGAGGTGGTGATCATGGAGACAGATTTGGCTGAAATGCCTGAGAAAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
-ZNF286A:NM_020652:1
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCGCTCCTTCTTACGCATG
R:
CTGGCCAGACGAGTTAGAAGC
Band lengths:
302-572
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)