Special

MmuINT0178927 @ mm9

Intron Retention

Gene
ENSMUSG00000047342 | Zfp286
Description
zinc finger protein 286 [Source:MGI Symbol;Acc:MGI:2384758]
Coordinates
chr11:62602432-62602919:-
Coord C1 exon
chr11:62602878-62602919
Coord A exon
chr11:62602592-62602877
Coord C2 exon
chr11:62602432-62602591
Length
286 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
ATGCTTTCCCTGGTTTCCAGGTC
3' ss Score
9.36
Exon sequences
Seq C1 exon
AAGCGGAGAAGTTCGTAGCCTTTGTCAGGCCTGGGATGGGAG
Seq A exon
GTGAGTTTCTTGGTAGGATGCTGCGGTCCTCGCTTTACCTCGGCGGTGGTCCAGTAGTTGCTCTCTGCCAGGGAGGACTGGAGTTTGTAGTTCTTGAGCTTCGTCCCCTTCCCTCCCCGCCCCACGGGCCATCTAGGACCCCGGTGCATACTGGAGAGCTGGACGGAGCTGGAGGGGTTGTCTGTGCCCTCTACCTCTCAGGCACTCAGTCCCCTAGGGGACAGCTCCAGGAGCCAGAAACAGACAGGTGAGGACTCAGATTCAGGATGCTTTCCCTGGTTTCCAG
Seq C2 exon
GTCCCACGTGATCTGAGCGACACTCTCTACAGAGCCCAAGAGGGAAGAAGTCCTTCGAGGCTCCGTGGACTGCTGACTGCGCGAGAAGAGCAGGACCTTAGGGGCATGGAAGAGGTGGTGATCATGGAGACGGGTTTGGCCGAAGTGCCTCAGAAAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000047342-Zfp286:NM_138949:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact





	

	
5' UTR





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=NA A=NA C2=0.195
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
NA

							
A:
NA

							
C2:
NO

						

					

				








    
Main Inclusion Isoform:
NA





     
                   









    
Main Skipping Isoform:
NA





     
      









    
Other Inclusion Isoforms:
NA
          









    
Other Skipping Isoforms:
ENSMUSP00000055517, ENSMUSP00000104345, ENSMUSP00000131314
  



Associated events






Other assemblies


mm10




Conservation


Human
(hg38)
No conservation detected
Human
(hg19)
chr17:15603092-15603448 
HsaINT0186776
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
chr19:33672975-33673253 
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
GCGGAGAAGTTCGTAGCCTTT

				
R: 
TCTTTTCTGAGGCACTTCGGC

				
Band lengths: 
199-485

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






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