MmuINT0178927 @ mm10
Intron Retention
Gene
ENSMUSG00000047342 | Zfp286
Description
zinc finger protein 286 [Source:MGI Symbol;Acc:MGI:2384758]
Coordinates
chr11:62788930-62789462:-
Coord C1 exon
chr11:62789376-62789462
Coord A exon
chr11:62789090-62789375
Coord C2 exon
chr11:62788930-62789089
Length
286 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
ATGCTTTCCCTGGTTTCCAGGTC
3' ss Score
9.36
Exon sequences
Seq C1 exon
CCTGGATTTGCCCAGCAAAATGTCACGCATGCGCGACTCAGAGCTAAGCGGAGAAGTTCGTAGCCTTTGTCAGGCCTGGGATGGGAG
Seq A exon
GTGAGTTTCTTGGTAGGATGCTGCGGTCCTCGCTTTACCTCGGCGGTGGTCCAGTAGTTGCTCTCTGCCAGGGAGGACTGGAGTTTGTAGTTCTTGAGCTTCGTCCCCTTCCCTCCCCGCCCCACGGGCCATCTAGGACCCCGGTGCATACTGGAGAGCTGGACGGAGCTGGAGGGGTTGTCTGTGCCCTCTACCTCTCAGGCACTCAGTCCCCTAGGGGACAGCTCCAGGAGCCAGAAACAGACAGGTGAGGACTCAGATTCAGGATGCTTTCCCTGGTTTCCAG
Seq C2 exon
GTCCCACGTGATCTGAGCGACACTCTCTACAGAGCCCAAGAGGGAAGAAGTCCTTCGAGGCTCCGTGGACTGCTGACTGCGCGAGAAGAGCAGGACCTTAGGGGCATGGAAGAGGTGGTGATCATGGAGACGGGTTTGGCCGAAGTGCCTCAGAAAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000047342:ENSMUST00000054654:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.171
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCAGCAAAATGTCACGCATG
R:
TCTTTTCTGAGGCACTTCGGC
Band lengths:
236-522
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types