HsaINT0186800 @ hg19
Intron Retention
Gene
ENSG00000166526 | ZNF3
Description
zinc finger protein 3 [Source:HGNC Symbol;Acc:13089]
Coordinates
chr7:99672758-99673253:-
Coord C1 exon
chr7:99673165-99673253
Coord A exon
chr7:99672885-99673164
Coord C2 exon
chr7:99672758-99672884
Length
280 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
GCCAGCACGTGTTGTTTCAGGAG
3' ss Score
5.08
Exon sequences
Seq C1 exon
CTCTTCCTTCAAAAGTTCCTGCCTTTTCCGACAAGGACAGCCTGGGGGATGAGATGTTGGCGGCTGCGCTCCTAAAGGCCAAGTCCCAG
Seq A exon
GTGAGCTGTGGTTCCGTTTATCCTTTTCCTTTCCATTTTCTGTGCAATGACATCCCATTCAGAGCTTTAAACCCTGATCTCCTCCATCAGGCCCATGGTTCTGTCCTGCTGAATCATGGACCCTCACCTTCTATCTTGGACTCCTGTCTCTCTTCCTCCACCCTGTCCTCCCTTCCTCCCTTCCCAAATGTGCATTTTTCACCCCATCCTCAGTGATTTTTTTGGTGCCGCCATTCACATTCCTCACCCTGAAATTGCATGCCAGCACGTGTTGTTTCAG
Seq C2 exon
GAGCTGGTAACCTTTGAGGATGTAGCTGTGTACTTCATCCGGAAGGAGTGGAAGCGTTTGGAACCTGCTCAGAGGGACCTCTATAGAGATGTGATGCTGGAGAATTACGGGAATGTGTTCTCACTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000166526-ZNF3:NM_017715:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.024 A=NA C2=0.032
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3),PF074636=NUMOD4=PU(48.2=62.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTTCCTTCAAAAGTTCCTGCCT
R:
TGAGAACACATTCCCGTAATTCTCC
Band lengths:
212-492
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)