RnoINT0167751 @ rn6
Intron Retention
Gene
ENSRNOG00000001341 | Zfp113
Description
zinc finger protein 3 [Source:RGD Symbol;Acc:6489147]
Coordinates
chr12:19291736-19292420:-
Coord C1 exon
chr12:19292329-19292420
Coord A exon
chr12:19291863-19292328
Coord C2 exon
chr12:19291736-19291862
Length
466 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
3' ss Seq
TGGCCATGTGACTGTTTCAGGAG
3' ss Score
7.76
Exon sequences
Seq C1 exon
CTCTTTCTTCTTCAAAAGTCCCTTCCTTTCCTGACAAGGACAGTCTCGGGGACAAGATGTTGGCTGCTGCACTTCTAAAGGCCAAGTCCCAG
Seq A exon
GTAAGCTATGGTTCCCTTCTTTTCTTTCTGATGTCTCATTCAGTGCCCTAAATTCAAATTCTGTCCATCAAGACCGTAGGTCTGGGGTCAGTGAGATGATGCAGTGGAAAGGTGACTGCTGGCACCCTGTGAATCCGAGTCCACTCCCTAGTATGCACATGTTAGCGAGAGCTGACGATCTCAGATTGCCCTCTGACTTCCACATGTGTGCAGTGATACTCCTTCCCCAAATAAATACATGTTAATAAAATAATTACTTCTATTATGGATTCTTGGAAGGGAGTTACGCTTATCACTACACCTTCAATGCTACACCCTGTTGTAGATGTTCATGCTGGCATTGCTCCGACCGACCTCTGCCCACATCCCAAGGAGGTATTACTTATCTCCATCCTGGCTGCAGTTTGGTCTTGCCAGTCCCTACCCTTGCCCTGAAATTGCATGTCTGGCCATGTGACTGTTTCAG
Seq C2 exon
GAGTTGGTGACATTTGAGGATGTAGCTGTGTACTTCATCTGGAAAGAGTGGAAGCGTTTGGAGCCTGCACAGAGGGACCTCTACAGGGATGTGATGCTAGAGAACTATGGGAATGTGTTCTCACTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001341:ENSRNOT00000001815:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.194 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTTCTTCTTCAAAAGTCCCTTCCT
R:
GTGAGAACACATTCCCATAGTTCTCT
Band lengths:
215-681
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]