MmuINT1035467 @ mm10
Intron Retention
Gene
ENSMUSG00000037007 | Zfp113
Description
zinc finger protein 113 [Source:MGI Symbol;Acc:MGI:1929116]
Coordinates
chr5:138150607-138151296:-
Coord C1 exon
chr5:138151205-138151296
Coord A exon
chr5:138150734-138151204
Coord C2 exon
chr5:138150607-138150733
Length
471 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
TGGCCATGTGACTGTTTCAGGAG
3' ss Score
7.76
Exon sequences
Seq C1 exon
CTCTTTCTTCTTCAAAAGTCCCTTCCTTTCCTGACAAGGACAGTCTGGGGGACAAGATGTTGGCTGCTGCGCTTCTAAAGGCCAAGTCTCAG
Seq A exon
GTAAGTCATGGTTCCCTTCATTCTTTTCCTTTTCCTTTTGATGTCTCATTCAGTGCCCTAAATTCTAATTCTGTCCATCTAGACTACAGATCTGGGGGCACTGAGATGATGTAGTGCATAAAGGTGTCTGCTGCCATCCTGCGAATCGGAGTTCAATCCCTAGTAGCCACATGTTAGAGAAAACTGGCTCTCAGATTGGCCTGTAACCTCCATGTGTGTACAGTAATAGCCCTTCCCCAAATAAATACATGTTAATAAAAAAGTACTTCCGTTATGAACTGTTGGAAGGCAGTTATGTTCATCACTATACCTTCAGTGCTGCACCTTGTTGTGGATGTTCTTGCTGGCATTGCTGCAACCTCTGCCCACATCCCCAAAGAGGTACTATCAGCCCCATGCTGGCTGCTATTTGGATTTTCCAGTCCAGACCCTTGCCCTGAAATTGCATGTCTGGCCATGTGACTGTTTCAG
Seq C2 exon
GAGTTGGTGACCTTTGAGGATGTAGCTGTGTACTTCATCTGGAGAGAGTGGAAGCGTCTGGAGCCTGCACAAAGGGACCTCTACAGAGATGTGATGCTGGAGAACTATGGGAACGTGTTCTCACTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000037007:ENSMUST00000049393:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.172 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTTCTTCTTCAAAAGTCCCTTCCT
R:
GTGAGAACACGTTCCCATAGT
Band lengths:
215-686
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types