HsaINT0186813 @ hg19
Intron Retention
Gene
ENSG00000145908 | ZNF300
Description
zinc finger protein 300 [Source:HGNC Symbol;Acc:13091]
Coordinates
chr5:150277624-150278116:-
Coord C1 exon
chr5:150277990-150278116
Coord A exon
chr5:150277747-150277989
Coord C2 exon
chr5:150277624-150277746
Length
243 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
3' ss Seq
CTGTGATTTCTGTTTAATAGGGT
3' ss Score
8.49
Exon sequences
Seq C1 exon
GGGTTAGTATCATTCAAGGATGTGGCTGTGGATTTCACCCAGGAGGAGTGGCAGCAACTTGACCCTTCTCAGAGGACCCTGTACAGGGATGTGATGCTGGAGAACTACAGCCACCTGGTCTCAATGG
Seq A exon
GTAAGGATGGCTTCCCTGAATAACTCAGAGTTGTCCAATCAAGTGCCTTTCCTTACTAGTTGCTGTGATTAGATTGTTCCTGACATATGTCATGACTTTTATGACCTTCATACCTTTGCAAATGGAGGTTATGCCTTTGTTGAGGGCTAACTGGACAGCTTTATTGTAGACCATCTGAAACTGCACCTTCTCTTTTTCCTTCAGTGCAGTCAATCTCAATTCTCTGTGATTTCTGTTTAATAG
Seq C2 exon
GGTATCCAGTTTCCAAACCAGATGTCATCTCCAAGTTGGAACAAGGAGAAGAGCCATGGATCATAAAGGGAGACATATCAAATTGGATCTATCCAGATGAATATCAGGCAGATGGGAGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000145908-ZNF300:NM_052860:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.086
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3),PF100774=DUF2314=FE(48.8=100)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTATCATTCAAGGATGTGGCTGT
R:
CTTGTCTCCCATCTGCCTGAT
Band lengths:
245-488
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)