HsaINT0186813 @ hg38
Intron Retention
Gene
ENSG00000145908 | ZNF300
Description
zinc finger protein 300 [Source:HGNC Symbol;Acc:HGNC:13091]
Coordinates
chr5:150898058-150898554:-
Coord C1 exon
chr5:150898428-150898554
Coord A exon
chr5:150898185-150898427
Coord C2 exon
chr5:150898058-150898184
Length
243 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
3' ss Seq
CTGTGATTTCTGTTTAATAGGGT
3' ss Score
8.49
Exon sequences
Seq C1 exon
GGGTTAGTATCATTCAAGGATGTGGCTGTGGATTTCACCCAGGAGGAGTGGCAGCAACTTGACCCTTCTCAGAGGACCCTGTACAGGGATGTGATGCTGGAGAACTACAGCCACCTGGTCTCAATGG
Seq A exon
GTAAGGATGGCTTCCCTGAATAACTCAGAGTTGTCCAATCAAGTGCCTTTCCTTACTAGTTGCTGTGATTAGATTGTTCCTGACATATGTCATGACTTTTATGACCTTCATACCTTTGCAAATGGAGGTTATGCCTTTGTTGAGGGCTAACTGGACAGCTTTATTGTAGACCATCTGAAACTGCACCTTCTCTTTTTCCTTCAGTGCAGTCAATCTCAATTCTCTGTGATTTCTGTTTAATAG
Seq C2 exon
GGTATCCAGTTTCCAAACCAGATGTCATCTCCAAGTTGGAACAAGGAGAAGAGCCATGGATCATAAAGGGAGACATATCAAATTGGATCTATCCAGATGAATATCAGGCAGATGGGAGACAAGGGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000145908:ENST00000394226:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.081
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTTAGTATCATTCAAGGATGTGGCT
R:
TTCCCTTGTCTCCCATCTGCC
Band lengths:
253-496
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains