HsaINT0186895 @ hg19
Intron Retention
Gene
ENSG00000130844 | ZNF331
Description
zinc finger protein 331 [Source:HGNC Symbol;Acc:15489]
Coordinates
chr19:54067017-54072639:+
Coord C1 exon
chr19:54067017-54067046
Coord A exon
chr19:54067047-54072557
Coord C2 exon
chr19:54072558-54072639
Length
5511 bp
Sequences
Splice sites
5' ss Seq
GAGGTTAGT
5' ss Score
7.15
3' ss Seq
CTCTTTTTTTCCACCCCTAGCTC
3' ss Score
9.52
Exon sequences
Seq C1 exon
CTTTACCAGTGAGGAAACCGACACTGTGAG
Seq A exon
GTTAGTAATCATCAGAGCTCAGGTTTGCATCCTGAAAGACCACAGAGCTGCCAGGTGCGGTGGCAAAACCCATCTCTACTAAAAATACAAAAATTAGCCGGGCGTGGGCGCGCACCTGTAGTCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATGGCTTGAACCCGGGAGGGAGAGGTTGCAGTGACCCGAGATCACACCGTTGCACTCCAGCCTGGCGACAGAGCGAGACTTCATCTCAAAAAAAAAAAAAAAAAAAAAAAAGAGCACAGAGCCTGCATTCTTTTTTTTTTTTTTTTTTTTTGAGACAGAGTCTCACTCTGTTGCCCAGGCTGCAATACAGTGGCTATTCACAGGTACCATCCCACTACTGATCAGCACAGGAGTTTTGACTGCCTCTATTTCTGACCTGGGCCAGTTCATCCAAGCCTGTGTCCTTAATTTCAGCAAAACATCTCTGTCCAGATTATACGTACCTTTTTATTTTATTTTATTTTATTTTTTTTGAGATGGAGTCTTCCCCTGTTGCCAAGACTGGAGTACAGTAGTGCGATCTCGGCTCACTGCAGCCTCTGCCTCCCGGGTCCCAGCGATTCTCCCGCCTCAGCCTCCCAAGAAGCTGGGATTACAGGCATGTGCCACCATGCCCGGCTAATTTTTGTGTTTTTAGTAGAGACAGGGTTTTGCTATGTTGGCCAGGCTGGTTTTGGAACTCCTGACCTCAAGTGATCCACCCGCCTTGGCCTCCCAAAGCGCTGGGATTACAGGCATGAGCCACTGTGCCCGGACTATACATAATTTTTTAAATCTACCTTCTTCCCTTGGTAATTCATCAGAAATTTTTTCTCAATTAATCTGCATCAATATCATTAGTAAATGTATTCCATATCATTATATAACATTATTTATATATGTGTTCTCTACTATGAGATATTTCAGTTGTTTTCATTTTTAAACATTATCTGCTGGAAAATCTGGATAAGATCCATGGGTTGTTATTGTCCTGGTTGTGATATTTTACTGTTATTTTGCAAGGTGTCACAGTTGGCATAAATCAGGTCAAGGGTACAAAAGACCACTGTCTAGTATTTCTTATAACTACATGTGTATCTACATTTATCTCAGTTTAAAAGACAATCTTTCCTAGAAAAAACTGATTTTTTGAACATTCTTAGGCATGCATTCATATACTACTATAGCTATTTCCTTGTCATAAATTCCAGAATGTGGAATTTTTAGTCAAAATTAGACATTTGTTCAGTGCCTGCAATATGCCAGATGCTGTGGCTATTCGTACTTGGAATGAGAGTCTGATTCAGTGGACTCAGCTGCTGCCTGTACAGTGTTTATAATCCAGCAAGGGAAACTAAATAGAAGAAGCTCAAGGCAGCCTGTGGTCAAGGCCGGTGGAGAATTCCAGGTCACACACTCAGAGAGGTGCCAGGAAGGGGACATCATTCTGTGGACAGCCACTGATAATTCATGACCAGGTGATTCTGAATATACTGACTCTTTGTTGGGATAAATGGAATTTATTTTCTAGGCTTTATACCTTAGGTAATTTTTTTCCTTTTTAAATTTTTTGTAGAGATGGGGTCTTGCTATGTTGCCCAGGCTGGTCTCAGACTCCTGGCTTCAAGCAGTCCTCCCACTGTGGCCCCACAAAGCGCAGTGTTGGCATTACAAGTGTGAACCACTATGTCTGGCCTTTTTTGTCCTTTATCCTTTTTTATTTTTATTTTTTTTTCTTTTTGAGACAGAGTCTCAGTCTGTCACCCAGGCTGGAGTGCAGTGGCACGATCTGGGCTCACTGGAAACTCCACCTCCTGGGTTCAAGCAATTCTTGTGCCTCAGCTTCCCGAGTAGCTGGGATTACAGGCACGCACCACCACACCTAGCTAATATTTGTATTTTTCTAGTAGGGACGGGGTTTCACCATGTTGGCCAGGCTGGTCTCAAACTCCTGACCTCAGGTGATCCGCCCGCCTCAGCCTCCCAAAGTGCTGGGATTACAGGAGTGAGCCACCATGGCTAGGAGTAGACTTTTTAAGAAAAAAAAAGAAACCTTCTTTGTCTTTGGAGAGTCTAATTGCCTCTGACTACATTTCAAATCAGTACACATTTATATTTGATAAGGGAATGCATGCCTTTTGTTGCAACAAATAGGTGCACTGAAATGAAGACACTCAAGATCACGGGGTGTGTCAGGAGCTGTCAGGACCACCACCAGGTTCCTTGTTTCTCTAGATGGACTCAACAGGACTCACCATCTAGACCTACTCGTGACCGATTTATTCCAGTGAAGGGATACAAAGCAAAACCAGCTGAGGGAGAGGTTGCATAGGACAGGTTAGCAGGGCACCAGGCTCCCTCTTCCTCAGTCCTCTCCCAGGGGCATCACACCGGATGTGCCTGGCTCATCCAGCATCACATTGTGACAACACCTGTTCCATGTTATCGACCAGGGAAGCTCACCAGAGTCTGCTGGTGCAAGGTTTGGTTTGGTTTGGTTTGGTTTTGGGTCAGAGTTTTGCTCTTTCGTCCAGGCTGGAGTGAAGTGGCATGATCTCGGCTCGCTGCAACCTCTGCCCCCTGGGTGCAAGTGATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGTTTACAGGCACCCGCCACCAGGCCCAGCTAATTTTTGTATGGTAGTGCAAGGTTTTGATCAGGGTTCATGCACACACTGCCTCGCACAATCTGAATCTTCTGGACTCCCGGAGGAAACCAAGGGTTCCGTGTAAACCACATTGTTTATACTGATTATTCCAGCGAAGGGATACAAAGCAAAATCAGAAGAGGGAGAGGTTGCATAGGACAGGTTAGCAGGGAACCAGGCTCAGTTTAGGCACAGCGAGCCACTCTTACACGTGAAAGAAGAGTGAGAACACTCGGGTGTGGTTTTCAGACGCCATGGGCCAGTGTTGCGAGCAGCCTAAGCATGGCAGTTTCCAGTTCAGTGTGTTAACTGTTTTGCATAAGGGGTCGTAGAACTTCCCGGATTTTTTCTTTCTGTTTCTCTGTTTTTATATCTCTATTTTATTTATTTTTCTACTGATATCTTAGGGTTGGTTTGTCAGCGTGTATGGTTCTGCATTCCCTCCTTCCCTCTCTCCTCCTCTCCCTCTCTCTCCATATATATACATGTGTATGTGTATGTGTATATATAGACAGATGCGTGTGTGTGTGTATTTTTATATATGGAATTTTACAAATGTTATTGTGTCATTCTGTTTTGGTAACCTAACTTTACTGAGAGTATGTCTGAAATATCTCTCATGTCTTTAAATATCTTTCTAACTTAACATTCAGTAATCATTTACTATTTTACTTTGATATTCTGTGTGTAATTATGCTGTCAGCTTTTCTGGACTCAAAAGTGCTCTCAGATGTCACCTCTGGTATACAAAAAAAACAGTTCTGTATATTACCTGAGCAGTTTCTTGTCCACCTGCCATGTTGTGAGTAACATCACCCAATCTAGAGGCCAGAAGAGGCCCAAGTTTGGATAATACAGCCCCTGTTCACCCTGGAAGCTTGTCTGGAGGGGCCAGGGTAGGCTCAGAATGAGACTGAATACTCTGAGCACCCACTGTCTGATCCTAGATCACAATCCCCCCATCCAGAGTTAGCTAATCTATGAGGCTCATGGGTATGGTCTGCATAGAAGACCACCCTCACTTCTGACACCACTGCAAGCTTGGTGGGGATTCCTCAAACCGCCCTCAGGTTCAACAGTTCACTAGAGCCAGGCATGGTGACTCATGCCTATAATCCCAGCACCTTGGGAAGCTAAGGTGGGAAGCTCACTTGAGGCCAGGAGTTCAAGACCAGCCTGGGAAATATAGTGAGACGCAATCTCTACAAAAAAAAAAATTAGCCAAGTGCAGTGGTGCAACCTGTAATCCCACCTACTCGGGAGGCTGAGGTGGGAGGATTGCTCGAGCCCAGGAAGTCAAGGCTGCAGTGAGCTGAGATTGTACCACTGCACTCCAGCCTGGATGAGAGTGAGACCCTGTCTTAAAAAAAAAAAACAAAAAACTATTCACTAAAAGGACCCACAGAATTCACTGAGAGATGTTATGCTCATGGTTACAGTTTATTACAAGGAAAGGATACAGATTGTCATCACCCAAGGAAAGAAGTACGTGGCCAGGTGTGGTGGCTCATGCCTGTAATCCCAACGCTTTGGGAGGACAAGGAGGGCAGATCACGAGGTCGGGAGTTTGAGACCAGCCTGGCCAACATGGTGAAACCCCATCTCTACTAAAAATACAAAAATTAGCTGGACATGGTGGCATGTGCCTATAGTCCCAGCTACTCAGGAGGCTGAGGAGAATCGCTTGAACCCGGGAGGCAGAGGTTGTGGTAGGCCGAGATCGTGCCACTGCACTCCAGCCTGGGCAACAGAGTGAGACTCCGTTCAAAAAAAAAAAAAAAAAGTACGTAAGTTGAAGTCCAGGAGGGTTCCAGACACAGAGCTTCTGGTGTCTTCTCCCTGTGGAGTCAGGACTCATTACTCTGCTGTCTTTGATGTGTGACAACAGGCACCAACTATCGCCAACTAGAGAAGCTCACCAGAGCTCTGATGTTGGAAGTTTTTATTGGGGCCTCAGCATGTAGACATGATTGACTGGTTGGTGGATTAACTGTCTACATGGTTAATCTTAGTGTCCAGGTCAGCTGATACTGCGTGACCAAAAGCTCCTACCCCGAATCCCTTGATTAGTATTTCTGGCATAGCAAGCCCCCATCAGAAACAAAGACATTCCTCTTAGAGGTAATATAGATTACCTTTCAGCACCAGAGGGCAAAGGCCAGACTACTTTTTAGGCAAGTACACATTCTTTACTACATCCCACCCATCCGTCCCCGACAGGGAGCTGGCCAGAAATGGAGCCCTCCTGTTAAATTGTCTGGGCCTGTCTTTGAGGCGCAAAAAAAAAAAAAAGTAAAGCCTCCTCTGCTGTGTGCAGCTAGGTTTCCTGAGGTTTCATTGAGAGCTTGGTTTAGGTTTGATCCATGATACTCTTTTTTTTTTTTTTTTTTTTTTTTGAGACAGAATCTTGCTCTGTCACCAGAGGCTGGAGTGCAGTGACGCAATCTCAGCTCACTGCAACCTCCGCCTCCCGGGTTCAAGCGATTCCCCTGCCTCAACCTCCCAAGTAGCTGGGACTACAGGCACGTGCCACCACATCCGGCTAATTTTTTGTATTTTTAGTAGAGGCAGGGTTTCACCGTGTTAGCCAAGATGGTCTCGATCTCCTAACCTTGTGATCCACCCACCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGCACCTGGCCTGATCCATGATACTCTTCACCTTTCCCAGATATGTCACGGTTATGTGTTTGTGTTGGGAAGCCAAGACAGAGGAGCCAAAAGGTCATATTACATCACTATGGGGACCCCAGATGCACCTCGTTTTAATCTCTTTTTTTCCACCCCTAG
Seq C2 exon
CTCTAGCCTCTCGGAATTTGTCTTCTTCAGTGGAAACCCCGAGAAGACTGATCAGTTCTTCAGTTCTAAAACAATGGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000130844-ZNF331:NM_001079907:3
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
ENSP00000253144, ENSP00000393336, ENSP00000393817, ENSP00000421014, ENSP00000421728, ENSP00000422471, ENSP00000422586, ENSP00000423156, ENSP00000423263, ENSP00000423675, ENSP00000424835, ENSP00000424929, ENSP00000425517, ENSP00000426127, ENSP00000426155, ENSP00000426458, ENSP00000427439, ENSP00000427532
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)