HsaINT0186912 @ hg19
Intron Retention
Gene
ENSG00000198185 | ZNF334
Description
zinc finger protein 334 [Source:HGNC Symbol;Acc:15806]
Coordinates
chr20:45132853-45133379:-
Coord C1 exon
chr20:45133253-45133379
Coord A exon
chr20:45132946-45133252
Coord C2 exon
chr20:45132853-45132945
Length
307 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
3' ss Seq
CTGTAATTTCCCATTAACAGGGT
3' ss Score
7.93
Exon sequences
Seq C1 exon
ATACCAGTTTCATTCCAGGACCTGACTGTGAACTTCACCCAAGAGGAATGGCAGCAACTGGACCCTGCTCAGAGGCTCCTGTACAGGGATGTGATGCTGGAGAACTACAGCAACTTGGTCTCTGTGG
Seq A exon
GTAAGGACTATTTCCCTGTACAACTCCCAAGAGCATACATTTCTTCTGTGTTACAAAAACATGTTGATTTCTAGAATTTATTTAGCCCTGAGCATCAGGGGAGCAAGAAGATTAAACCCTTTTAGACAGTAGAAGTTTGTGTATGTATTCACTGCCCTTCCCCTACCCTTCACCAAAATGTTCTAGCTTTACTGAGCTATTGCTGGGCATCTTCATTGCACAGCTTCTGAAGCTGTACTTTCTTCATTCTTCAGAGTCTCTGATGTCCAAAGATCTTGGTCCAAGTTCTGTAATTTCCCATTAACAG
Seq C2 exon
GGTATCATGTTAGCAAACCAGATGTGATTTTCAAATTGGAGCAAGGAGAAGAGCCATGGATAGTGGAGGAATTCTCAAATCAGAACTACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198185-ZNF334:NM_018102:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.030
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=100.0),PF128122=PDZ_1=PU(16.4=75.0)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0),PF128122=PDZ_1=FE(56.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCAGTTTCATTCCAGGACCTG
R:
TGGGTAGTTCTGATTTGAGAATTCCT
Band lengths:
217-524
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)