MmuINT1035561 @ mm10
Intron Retention
Gene
ENSMUSG00000017667 | Zfp334
Description
zinc finger protein 334 [Source:MGI Symbol;Acc:MGI:2388656]
Coordinates
chr2:165382691-165383365:-
Coord C1 exon
chr2:165383239-165383365
Coord A exon
chr2:165382784-165383238
Coord C2 exon
chr2:165382691-165382783
Length
455 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
3' ss Seq
ATACTGTTTCTTATTCACAGGGC
3' ss Score
9.19
Exon sequences
Seq C1 exon
AGATCAATCTCCTTCAAGGACTTGGCTGTGGACTTCACCCGCGAGGAGTGGCAACGTCTGGGCCCTGCGCAGCGTCTCCTCTACAGGGATGTGATGCTGGAGACCTACAGTAACCTCATCGCGGTGG
Seq A exon
GTGAGTGCAGCCCCCACACAGAGCCCAGGGGCAGCCTCATCGAGGTGGGTGACTGGAGCCCCCACACAGTACCCAGGGGCAGCCTCATCGAGGTGGGTGAGTGCAGTCCCCACACAGTACCCAGGGGCAGCCTCATCGAGGTGGGTGACTGGAGCCCCCACACAGTACCCAGGGGCAGCCTCATCGAGGTGGGTGAGTGCAGCCCCCACCCAGAGCCCAGGGGCAGCCTTTCTTCTGTGTCAGAGAACACAGCAGTAGTGACTTCTGTCACAGGGGAGAAAGCTGGTGACCATTTGTACACATATGCATGTGCATGCGTGCACACTACTCTTCACCAACTTGTACCAGCCCCATTTGAGCTAGCAGAAGGCATCTCCATCGCTCCGTTTCCCCGACCTTTAGTCCTTGATGTCCACAGAGCTTGGCTCAGGTTCCATACTGTTTCTTATTCACAG
Seq C2 exon
GGCTTCATGTGAGCAAACCAGATGTGATCTTAAAACTGGAGCAAGGAAAAGAGCCCTGGGTAGTGGAAAACTTGTCACGACAGAACCACGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000017667:ENSMUST00000103084:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.375
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAATCTCCTTCAAGGACTTGGC
R:
CGTGGTTCTGTCGTGACAAGT
Band lengths:
214-669
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types