HsaINT0187001 @ hg19
Intron Retention
Gene
ENSG00000169131 | ZNF354A
Description
zinc finger protein 354A [Source:HGNC Symbol;Acc:11628]
Coordinates
chr5:178138522-178152472:-
Coord C1 exon
chr5:178152377-178152472
Coord A exon
chr5:178140623-178152376
Coord C2 exon
chr5:178138522-178140622
Length
11754 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGT
5' ss Score
9.66
3' ss Seq
GATTTTTTTTTTCCCTCCAGGAT
3' ss Score
11.88
Exon sequences
Seq C1 exon
GGCTCCCATTTACCAAACCAAAAGTGATCTCCCTGTTGCAGCAAGGAGAAGATCCCTGGGAGGTGGAGAAAGACGGTTCTGGCGTCTCCTCTCTAG
Seq A exon
GTAAGTGGGTGGCCCGAGGTGCGGAATGGCCGCAGACAATGGTCTGGTTAATGAGAGGAGGTAGGAACGTTGGTTGGGAAACTCCCTTGAGAATTCTCAGGCCTCAAGAAGTGATGGGGAAGCGGAAGCCCAGGCTCTTAGGCAGGATTCACTTCCCCATGAATCTCTCAGAATCTCTTTCTTACTCTTTCCTGTTGTTTTAGAATAGGGCTGTATTTTCATGTATTCATTCAGCAAACATAGTCTATTTAAGGAATTTCAAATAATCACTCTGGCTGAAGCTCAGGGTGTATTTGGGAAAGGAGGAGGTGAGGAAGGAAATAGCCTAGAAAGCTAGGGAAGGGCCGCGTGGTAAGTGCTTGGGCACGGTTCTAAGAGGTGGAAACTGTCCCATGGAGCACTGGAAATAATGGAAGGATTTGGGCAGGAATCATATGGTCCTTGGTATCTTAGAAAAGTTGGTGTGAATCAGAAACAGCTGAGTCTCCATCCGTGTAAGAACAGCTAAGGGACCTGTGAGCATCACCACCCTGAAAACAAGAGTCCAGGGACGTGGACAGAGCTCCCAAAAAGTTACAGAGCATTGTTAGGACGCCACCATTTATGTCTAATGAAAATTATGTGTATGTGTAATGTGCACATAAGCAGAGAGAAAGGTTAGGAGGACACACCTTAGCTGATGACATTAGTTACACTTGGAATGGGATTGAGAATGGGTCCATGGAAGGGGGCATTACTTACATGTAGTATTTTAATGTTTCACAAAGAGAATATATTTGTGACGTTCTTATGTGATTTGAATTCACAAGAATGGTCACTTTGGAAGCATCGTGTTTGAAAGTGAGGCAGAACGCTGGGCACGGTGGCTCACGCCTGTCATCCTAGCACTTTCAGAGGCCGAGGCGGGCGGATCACCTGAGGTCAGGAGTTTGAGACCAGCCTGGGCAACATGGCAAAACCCTGCCTCTACTAAAAATACAAAAATTAGCCAAGCGTGGTGGGGCAGGCCTGTAATCCCAGCTACTCCGGAGGCTGAGACAGGAGAAACACTTGAACCCGGGAGGCGGAGGTTGCAGTGAGCCGAGATTGCGCCACTTCACTCCAGCCTTGGCGACAGAGTGAGACTCTGTCTTAAAAAAAAAAAAAAAGGCGGGAAGCCTTGCAGAGCGATTGCAGTCATGGAGGGAGGCAGGAGGTGGAAGGGCCTGGATGAAGGCACTTGCCGTGAGTTCGTGAGGGAGGAGGCGGCGCCCACGTGATCAGGGTACAGGAGCAGTTGGGTGTGGGATGGATTTCACTTGAGATGTGAGTGAAGTCGTCAGGTGGGGAACCCTGGTGGGCAGGTGTGTAAGTGACAGGGCCGAGACTCAAGGGAGGTCAGGGAGCCCATTAGCATGATGGGCATTAGAAGCTTGGAGCTGGCCAGGTGAGGGGGCCAAGTGGAGGCCCGAATTTCAGGAAACAGCATTTGCGAGGTGCTTAAGCAGGAGGAATCTGACAGAGCCCGAGAAGTAATCAGAGTAGAGAAACGGGGAGGGGCCATCGTGGCAGTGGGGGACTGAGAGTGGTTGAACTGGGGGGGCTCTGGCTCTGGGGGATCAAGGTTGAACCCTCGCCCACAGCTTTGTATAGCATTGGGCAGAAAGGGACACAGGTCTCCTGCTTCTGGAGTGCACGATCTAGTGGGGGACAAGGTGAACACACTCATTGCACACAAGGCACAGAAGGACACATTCCAGTGAGGACCACGTGGGAAAGACACTCGGTGCTGTGAGAGTGCAGAGCAGGCAGGTGGCGTCAGCAAAGGCTTCCCTGTGGAAGGGCCTGGGATCAAAGGACTGAAGAATTGCTCAGGCCTAAAGAAAGGTGTTCATGAAGGTCCAGAGAAGCAAAGCCAGCGAGGAGAAGGTGGAGCACCCGAGAGAGAGCCACGGGCCCTGTCACAGGGTTTGGTTGGTGCTTGAGAGCCAGGCACAGGTTCTGAGGAGCCGTAAGTAGCCCAGGGCAGGCCTAGGCTGCTTTCTGCAGCCGCCAGCCCATGTGGAGAACCTGACGGCCACAGTGCAGGGCTTGTCAGGTCCAGAGGGCTCAGTGATGGCCCCTTATGCCATGGGCCCAGCAAGGAGCTGCAGGGCAGGCAGCCTCGGTCCCCACAGCCCCTGTGCTGGGGAGAGCTTTCTCCTCCCTGAAGAAAGGTGAGATTTTTTTATATGGGAACCACACTTGTTTATCTTTTTAACTCTCCTTTGGGAGAAATACACTACGTGGTCTGGCCCTGGCTACCTCTTCACTCTCAGCTCCTTCCACTCTGCCCTTCATTCGAGGCCTCTGATCACCCTTGGCCGCCCTGCAGTGTGTCATGGGGGGCGCCAAGCAGGCCCCCACTCAGGGCCTCTGCCCTGCTTTTTCTGTCTGGGACTGTTCTTCGTGGCGGTCATGCGTCCATGTGGCTCGCTCACTTCCTTGTGCTGCACAGGCTTCGGCTCACACAGGCACAGATCATCTGACACGCAGCCCTGCAGCCCCCACGCCATCTCCTCACCGTGCTTTATTTTCCCTCCTCGTGCTTAGCGCTGTGTAATAGATCTGTTTCTTCATGATCTGTCTCTGCCTCTGCATTGTAAGCTGCTGTGGGAGGGGTTGCCTGTTTCATTCACTCCTGTTTTCCAAGAACCTAAAACAGTCCCTGGCCAGGGTATGCGTCCAGTTGTATAATGAATGCACGAGTGACTTGGACTAGGTTAGTGGTGTTGGAGACAGAAAGAAGTGAACCAGTCCCAGGGATGTCCAGGAGATACAGCCAGCAGGACTGTTAGACATGGAAGATAGAGGAGATGGGGTAACAAAGAAAATAAAAGCAAACAAAAGGGAGATGGGGTTGTCAGGGATGCTTGCTTGGTTTCTGGTTTGTTCTGTGACGGTTGGTGATGTCATTCAGTGAGATAGGAACACTAGAAGGAGATCAGATTTGGAGATGATGTAAATTTGGTTTTAGATTAATTGAGCTGTTTTTGGTTGACCTAGTTATCCCAGTGGCGATGACAAGTAGTGTTGATTTCGGAGTACAGTACCTCAAAATGTAGACTGAGCTTGAAATGTAAATTTGGGAGAACCTGATCAATATAGGGTGATTGAAATAATGGGAGAGGATGAGTTGGCCTAGGGAGAGTGTTCACATTACAGTAAGAGTAAGAAAGAGCCTAAGACTGAATCTTGAGGAACTCCAGCATTTCAGGAAGCCAGGCAGAGAGAAATGAACCCATAGGGAAGACAGGTAAAAGCGTACTGTAAGGAAAATCAGGAGAGGCAGGTGACATTGGAGGCAAGGCTCATGATGGAATGGTAGCAGTAGATGGGGAAAAGTAGACGAATGTGAGGCAGATTTAGATGGCAGAATAAACAGGTCTTGGTAATTGATTAGATGAGGGGGCTGAGGGAGGGAGAATTATTAAGGATAACTCTTAAGGTTTTGATTCAGAGGTGGTGCCATTTACAGAGACAAGGGGTTGACCAGGTCGGAGGGAAGAATCGTGAGTGTGGTTTTAGGTGTGTTGACTTTGAGGCATCTGAACTGCTCTTTTGAGTAGGTCGTCTGTAAGGGGGAGTCGAGTATGGGAGATATCTTGCTTAGAGGATGAGTCTATGATTGAAGTTGCCTGTGGAAAGATGCAGAGTGAGAAGAACTGGGGGCCTAGAACTAAAGCTAAGGCACTCCAAGGATGATAAACTGTGGTACGTCCACACAGCTGTAAAGTGGAATGAGGAGGACCTCTGTAACTTCTACTATGGAGTGATCTCCAGAATGTGAGAATAAGTGCAGAACAGCACAGTTAGTACTGTTATCTAAGAAAGGTGGGTGGGAATACCAAGAAAAGTGTGTGTGTATTTACTTACACTGTCATGGAGCACATAATGTTTCAGTCAATGATAGCCTACATATATGATGATGCTCCCATAGATGATAATACTGCATTTTTCCTGTCCCTTTTCTATGTTTTAATATGTTGAGATGCACAAATACTTACAATTGTGTTACAGTAGCCTACAGTATTCAGCTAAGTAACATGCTGTATAGGGGTATAGCCTAGGTGTGTAGTAGCCTATACCATCTAGATTTGTGTAACACACTCTGATGACTGCACAACATCGCCAACAACGCGTATCTCAGAACATATCCCAGTCATTAAGCAGTGCAATTATTTTTTTTAGAAAGATAAAAGCAAAAGAAAAAAAAGGAGATCAATAAAAATGGTTATCTCTAAGGTGAAGGAAGAAAAAGGATGGAACAGGGGTAGAATCTATGACTTTTTGAGGTCTCAAAATTTTGACTTCAGAACTATAAAAATGGTTTATAAAATTATAAGACAAAATTAAACAAAAATGAGAAAGTACCCCCTACATATTGAAAGCAGAATGAAACAACCCTAATTGTGTTCCAGGTTGGTGGCTTAGCCACAAAAAGAATTATTTGAATTGCCTTTACATTGCAGCAGTTTGACTTATTAGTGTAGGTATTCTAGGGGCAAAAGTAACTGCAAGCAGTGGTGTTAATTTTGATGGATGTGCTAAGAGCGGTTTTGATGTTTTTACAGATGAAATGATTTTGCTGTCTGGGATGTGCTCTAGCATAACCTAGTGGACGAGATGAAAGGGTTTGTGTTAGTTTGCTAGGGCTCCATACTGAAGTACCACAAGCTTCGTGGCTTAAAACAGTAGAGATTTACTGTCTCACAGTTCTGAAGGTCAAAATCAAGATATTCGCAGGGCCCCGCTCCCTCTGAGACTCTGCATAGAATTCTTCCTTGCCTTTTGCTAGCTTGTAGCGATGGCCAACTTGGAGATCTCCGTGGCCTGCAGCTGCATCAGTCCTATCTGTGCCTCCGTCTTCACACTGTGTTCGCCCGGTGTCTTCACATCATCTTTCCTTCTGGATGCCTGTGTCCAAATTTCCCCAGTTTACGGGGACAGCAGTCACGCTGGATTAGGGCTCACCCCAATGACTTCATCTTAATTTGATTGAACGTGCAAAGACCATATTTTAAAGTAAGGTCACGTTCTGAGGTCCTGGAAGTTAGGACTTCTACGTCTCTCTTTTGAATGATGCGGTTCAGCCCATAACAAGGTTGTCAATAGAATAGTGTTGCTGGTTATTGAAACTGGCTGGAGATTCACTGTACAATTCACACTACTTTTACATATGCTGAAAATTTCTATGTTAAAAGCTTTAAAAATAAGAGTTACCACAACAACATTTCTAAAACAGCTTTTCTCTTTTCCACCAGCACAAAGATGATAGAGGATGTTTACAAATAGGCAGTACTACCCCCATCATGGTTTATGTGCAGTTCCCAGCAGATTGCTCCTTGAGTTCTCTGACTCTAGAAAACCTTGTGAGACTGCAAATGCAAGTGACATTTTTTTTTTTTTTTGAGACGGAGTCTCGCTCTGTCGCCCAGGCTGGAGTGCGGTGGCGGGATCTCGGCTCACTGCAAGCTCCGCCTCCCGGGTTCACGCCATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGACTACAGGCGCCCGCCACTACGCCCGGCTAATTTTTTGTATTTTTAGTAGAGACGGGGTTTCACCGTTTTAGCCGGGATGGTCTCGATCTCCTGACCTCGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGCGCCCGGCCGCAAGTGACATTTTTATAGGTGGAGCTTTTACTCTGACTAGCTATAGGATAAGGTGGGGGTGGATACTTCAGCAAATAAGTCTGGAAAACTGACTTGCATTCAAAGACTTGGGTGCTGCCTTCAGCCCTTGTGCTACCCCTTCATCTAGCCTATGGCGATTCCTTTCACATCCTATCTTATATGTCAATTCTTACGAAACACTCCAGCAGCGTCCTGCTGCACCCCTTTTCTACCTGCACCCTCACTATCTAAGGACAGTTGGATATGATTCTAAGCTCGTGTTCACGTCCATTTCTAGCTTATGTTTCTATTGTAGAAATTGTCACATTGTATTGTGATTACCTACTGATGTCTTCATTTCTAATGTCTGACTATAAACTCTCTGAAGAAATCAACTGTTCCTTTTAATTACTGGATCCGTAGGGAACTGTGGATCACCGATGCCTAGGATAGAGCCTAATACATAGTAGGTACTTTTTAAATATTTGATAAATTAATAAAGTAAGGCGTGACCAATGCTTTTTGAAATAACATGACCAATTCTGTGTATTAAGAGGGGTAAATCCAGTGGGAAATAATACTGGAAAGGCAAGAAACAGGTCAAAGGAATAACTTAAGATCAGGAGCAAGTCACTCTACAGTGAGGAGATCCTGAACTTAGACATATTCACGATGGCTTATTAGAGACATTTTAGTGATGAGATTTAAGAGAATGTGCAGCCTGGGCAACACAATGAAACCCTGTCACTACGCAAGATAAAAATATTAGCCAAGCTTGGCAGTGTGCACCCGTAGTTCCTGCTGCTCAGGAGGCTGAGGTGGGAGAATCGCTTGAGCCCTGGAGTTTGAGGCTGCAGTGAGCTATGATGGCACCAGTGCATTTCAGCCTGGGCAACAGAGCAAGACCCTGTCTCTCAAAAAACAAAAAAATGAAGATTTTGATGACTGCCTAGGGAAGAGAAATTCTAAGATAAAACTAAGAATTTACGGTAAATTAACTGAAGAGATGATGGTGTCATTTTGAACTGGAAAACATATAAAAAAGGTTTGAAAAGGAATGCTCTGGGTTCAGATTTGGACAGGCTGAATTTAAAAAGAAAGATACACAAGTGGAAATTCTAACCGGCAGTTGGAAAGACCTCTGTAAAGTATTTTTCAGGATAGTCGTACACATAAGAGGTGTGGGAGTAAATGAAATCATCCAGGGAGATAGGGTTGAAGAAACACTCTCTGGGTGTAGTGAGAGTCCAGGTGGAAGAGTCTAGACCTGATAACAGGAAGTGGTCAGGGCAGTGGCCATCAGCAAGATGATTCTGGCTTCTCAACTTCTGACCTAGGTCTTCACCTTGTTTAACAGGTAGCTGAGGACTGGGCTTGATTCTAGGAGGAAGCAAAGGTTGAACTGCACCTCAGGAGACCTATTTGTAGGCCTCTAGAAAGTTCTAAACAGATCATAAGGAAGAGTCAGGATATCCACAATCCAAAACTTACGTCTGCTTCTGTGAAAAACATGATTTCAGGACTAAAATATTGGCACTTTAGAGTTGGGATGAGTTTTCCAGAATTGATAATGGACTTCCGAGTCGTAATCATATCCATTAAAAAATAAAAGCTCCCCATGTCACATTTGCTTACTCTCCTTTAGAAACTGTTGAAAAGGGTTTCTGCTCTTGATGTTTCTATTTTCTCACCTCCCATTGTTTCCTCCATGCACTCCAGCTGGGCTTTCTTCCTTATAATTCCACTGATAGCTCTGTTATTAAATCCCAAACAACCTCCGTCTTGCCACAATCAGGATTAAGTTTTTAGTCCTCAAATTATTTGCCACAGTTATTCACTCCTCCCTGAAGTACTTCTTCCCTTGGCTTCTGGAACACTGTACTCTCCTGATATTATTCTTCTTAACCTCGTAATATTTCAGTGTCTAAGTGATTCCTTTCAGTTCTTCAGCTTTAAATCAAACCCACATGCTGCTGACCCCCAAATGCCTGTCTATAGCTCTGACCTCCCCCAGATCTCCAGAATAATAAATACAATCTAGTATTTCAGTATCTTCCTGCAACTCTATTAAGGCATCTCAGCCATCACAAACATACCAGAAACAGAATGCCCCCTCAGCCTTGCCCCTTTCCTGGTCTTCCCCTTCTAGCCTTGCCCCTTTCCTGGTCTTTCCCTTCTTGGTGGTTGGTGGCAGCTCTCAGAATTCTGGCTAGAAACCTAGGCATGATCCCTAACTTTCCTGTTTCCCTCTCAGCTTCCTGGGAGTCCTGAGTCTTGTTATTCTTGGTCCCGCTAGCTCTTCCTTCACTGTACAGCCTGGCATAGTCATCTGTACCTCCAGCCCTTTCTCACGTGAAGAGCTGCAGTAGCTTCTTCAGTAGCCTCTCCCCTCCCTGCTTCCACTGGTGCCCCAGCGTAGTCGGTCCACGCAGCAGCCAACTCAAATGAACACATAATTCCCCAGTGGCTTCCCGTAGGCTTAAATTCCAGTCCTTAGGATGACCTGGGCCTTAGAGGATTTGTCCCCCACCTCCTGCTCCACTCTTTTGTTTTTTATTTTTTGTTTACTTTTTTTTTTTTTTTTTTTGAGATGGAGTCTCACTCTGTCGCCCAGGCTGGTGTGCAGTCATGTGATCTGGGCTCACTGCAGCCTCTGCCTCCTGGGTTCAAGCAATTCTCTGCCTCAGCCTCCCGAGTACCTGGGATTATGGGCGTGTGCCACCACACCCGGCTGATTTTTGTATTTTTAGTAGATAACAGATTTCACCGTGTTGGCCAGGCTGGCCTTGAATTCCTGATCTCAGGTGATGCACCCACCTCGGCCTCCCAAAGTGCTAGGATTGCAGCTGTGAGCCACCACGCCCGGCCCCGTTCCAGGCTTATTTTATCATTTCACCATTTTCCCTCTTCTCGCTCTACTCTGGCCAGTCTCTCTGCTGTTCCTAAGTCAGCCTCACTTTTGTGTGTGTTGGTTCCTTTGCCCAGGGAGCTCTTGAGCACTTTCTTCAGCTATCCACATGACTTTTATTACGTACTTGTTATTTGTCCCTTCATCCCCCTCCTTCCCCAGCACATGCGCACACTCCAAAGTATAAGCTCCTTAAAGGCTGGAACCCTGTCTTATTGAATACATTATCTGCATTCCCCAGAACATTACCTGGCCCATAGTAGGCACTTAATGAGTACTTGTGAATGGAAAGGATGCTGCCAGCATATGTAAAGATAAACAAGTCAAGTCATGGAGTGCTCCTGAAGCTGCATGTAGTTCAGCATACCTGGCAAGAAGCCAGGGAAGAGGGGGTGAGGACAGGTGGATAAAGGTCAGATCAGATAGTACTCTATTCACCATGTTAAGGACGCCTAAGAGTCTTCAAGACTCTTAAGAGACTTCAGATGTGAATCATTGAAAATCTATTGGAGGACCTTAAGGAAGTTTGCCACATAGTAAAATATTGATCTTAGAAAGATTGGCCGGGCATGATGGCTCACACCTGTAATCCCAGCGCTTTGGGGAGGCTGAGGTGGGCGGAACATGAGATCAGGAGTTCGAGACCAGCCTGACCAACATGGTGAAACCCTGTCTCTACTAAAAATACAAAAATTAGCCAGGTGTGGTGGCGCACACCTGTAATCCCAGCTACTTAGGAGGCTGAGGCAGGAGAATCACTTGAACCTGGGAGGGGGAGGTTGCAGTGAGCCGAGGTCGCGCCACTGCACTCCAGCCTGGGTGACACAGTGAGACTCCATCTCAAAAAAAAAAAAAACCACAGAGATTATTCTGGCTGCAGTGTGGAGACTGAATTGGCAGAGGGCAAGACTAGTTAGGAGATTATGGTAGAGATAGTAATGCATGGCAAACAAAATACCACTTAAGTACCTGATCCCCGTGCTCAGGGCTGTAGCAAAGGTGAGGGACCTTTCTTTACACTAGGCCTAAGGCAGGTTCTGTATCATTGCCTTACAAGCTAGAATCCAAGTTGCAGAATCTTGCTGCTGCCTTCTTCCCAGCACATATATTAAGCCTAGAAACAACGACCGATATTCACAGGGAAAAAGCACTTCATTTTTGCCACTGCCCCCTCCATATATTTGGCCTAAATAATGTATTAAAATTTGATCACTTAATTTAGCAAGACTGAAACGGAGAAGGAACTAGGAAGGTGTTAAGCATAAAGTTAAGAAACTCTGCTTTCCCTTACAGTAAATAGTATAAAGATATAAGGCATGTGAAGTTAGTCAGGGAGGGTGTGTGGAGTGAAAAAAAAATCCAAAACCCTAGGGAATACCATTATTTAAAGAAGGAATGGAAGAAGAGTTATCCATGAAGGGAACTAGTAAGTGAACACTAATAAGGGAAAAGCAAGATGTATTGTGTTTGTTAAGCAGAAGTAATTTGTAGATGTGTGAAAGTGACTGTCATACAGGAATCGCAAATACAGTGAGACACAAATGGTCCCTTTAAACAGTTACCTCTACCCCAAGAGAAGATGCTAAGACTATGTGCATAACCGTTCCCCTGAGAGAATTTACTATCTATTGAATTGTGTTCTTATCCAATTTTAATATTTCTTCACTTCTGTTCTTTACTTTTCCATGTTAACCATGCTTTATCTTATATATCCATGCCTGTCTTATTGTTGATCTTTGACTCTTTTCAGCCATCCCATGTAACCTCTCTTGCTTGATGCATGAGTAGGCTGCCTTCCTATCTTGCACCTCTTGGCTCTAGGCCTGTCTTGTGGCACCTCTTGTCGATTAATTCAATAACAGGGCCCTCCTGTTTGAACTGGCCCTGAAACCTCTCTAATCACCCATGTACTGGCCTAGGAGGCAACTTCTACAAGGGTCTGAAATGTGTATGTGTATGTATGTATAACACATGTGCATATTTGTATATATATGAAGTATGTATGTGTATGTATGTATAACACATGTGCATATTTGTATATATATGAAATACGTAAGAATATTTGACATTGTTCCAGTTAGGAATGTATAAGTAATTAAGGCAGATTAACAAAACATACAACTTTTGTATATAATTGGAGTGCTGTCAAGAGGATCTGTAGGAAAATAGGGCATTCTGATCTGCTTGTGAAGAACAGTTACTTCAGAAAAGGAAAGTGAGATACATACAGACATAGATATAGAACTATAATATACTATATATGTGTGCATATATTATAAAGGTCAGTAATACATATGTTTAATACTCTGGTAAGTGCTATAGTAAGGAGAAGGGACCGTGGCTGCTCAGAGTCAAAGGATTGAGAGAGTCCATTTTTGAACTGAATCTGAAGGATATAAGGGAATTTGACATGGGGTGGAGGGACTTTCCAGATTAAGAATAATTATATAAAGGCTGAGCACAGTGGCTCATGCCTGTAATCCAAGCACTTTGGGAGGCCGAGGTGGGTAGATCACTTGAGGTCAGGAGTTCAAGGCCAGCCTGGCCAACACGGTGAAACCCTGTCTCTACTAAAAATACAAAAATTAGCCAGGCATGATGGTGGGTGCCTGTAATCCCAGCTACTCAGGAGGCTGAGGCACAAGAATTGCTTGAAGCCAGGAGACCGGTTGCAGTGAGCCGAGATCGCGCCACTGCACTCGAGCCTGGGCGACAGAGTGAGACTGTCTCAAAAAAAATTACACAAAGAAGATAAATGTCAAAAAAAAAAAACAAAAAAAAATTAGGATTCCATCATGGGTTTTGGGTCCTAACCCCAAACTTCCTCTTTCAACTCATGATCCCTTTATAACCCTTTTCTCTGTTCTTCATTAGCCAATTCTTCTGGTCACTCTTTCTCACCCTCTTTAAATGGGTTTGCTTTATTTTATTCTTCACCCTAGTACTTAAATTGCTGTCAATTATATTTTATTATACTGTCTAACTGTCCTATTTTTTCTTTTTGCAATTTTTTTCATACAGATATCAGGGTCTTATTTAAATGTCACCAATATTTATTCCTTCTACACTTTTAGTCTCAGTAGTCAGATGCTATGATATCACATGAAACATTTTTGATTTTTTTTTTCCCTCCAG
Seq C2 exon
GATCGAAGAGCAGTCATAAAACCACAAAGTCAACGCAAACACAAGACTCTTCATTTCAGGGACTGATACTGAAAAGATCCAACAGGAATGTACCTTGGGATTTGAAATTAGAAAAGCCTTACATATATGAAGGCAGATTAGAGAAAAAGCAGGATAAAAAGGGAAGTTTTCAGATAGTTTCAGCCACCCACAAAAAAATCCCCACTATAGAAAGAAGCCATAAAAATACTGAATTGAGCCAAAACTTCAGCCCAAAGTCAGTGCTTATTAGGCAACAGATACTTCCCAGAGAAAAAACACCACCAAAATGTGAAATACAAGGAAACAGCCTCAAACAGAATTCACAATTACTTAATCAACCAAAAATTACAGCAGATAAACGCTATAAATGTAGTCTGTGTGAAAAAACCTTCATTAACACTTCATCCCTTCGTAAACATGAGAAAAACCATAGTGGAGAGAAACTATTTAAGTGTAAAGAATGTTCAAAAGCCTTTAGCCAAAGTTCAGCTCTTATTCAACATCAAATAACGCATACTGGAGAGAAACCCTACATATGTAAAGAATGTGGGAAAGCCTTTACTCTCAGTACATCCCTTTATAAACATCTAAGAACCCATACTGTGGAGAAATCCTACAGATGTAAAGAATGTGGTAAATCCTTCAGCCGAAGGTCAGGCCTTTTTATACATCAAAAAATTCATGCTGAAGAAAACCCTTGTAAGTATAATCCGGGTAGGAAGGCATCTAGTTGCAGCACATCCCTTTCTGGATGTCAAAGAATTCATTCTAGAAAGAAGTCCTACTTATGTAATGAATGTGGCAACACCTTTAAGTCTAGCTCATCCCTTCGTTATCATCAGAGAATTCACACTGGAGAGAAGCCTTTTAAATGTAGTGAATGTGGGAGAGCCTTCAGCCAGAGTGCCTCTCTTATTCAACATGAAAGAATTCACACCGGAGAAAAGCCCTATAGATGCAATGAATGTGGGAAAGGCTTTACTTCTATTTCACGACTTAATAGACACCGAATCATTCATACTGGAGAGAAGTTTTATAATTGTAATGAATGTGGTAAAGCCTTAAGCTCCCACTCAACACTTATTATTCACGAGCGAATTCATACTGGAGAAAAACCATGTAAATGTAAAGTATGTGGAAAAGCCTTCAGACAGAGTTCAGCTCTCATTCAACATCAGAGAATGCATACTGGAGAAAGACCCTATAAATGTAACGAGTGTGGGAAAACATTCAGGTGTAACTCATCACTTAGTAATCACCAGAGAATTCATACTGGAGAGAAACCATATCGATGTGAGGAATGTGGGATATCTTTTGGCCAAAGTTCAGCTCTTATTCAGCATCGAAGGATTCATACAGGAGAAAAACCCTTTAAATGTAATACATGTGGAAAAACTTTTAGACAAAGCTCATCACGTATTGCACATCAGAGAATTCATACTGGAGAGAAACCCTATGAATGTAATACATGTGGGAAACTTTTCAACCATAGGTCATCCCTTACTAATCATTATAAAATTCATATCGAAGAGGACCCCTAGAAAGTAGATTTGTATGTGTGAAAGCCTTAAACCAAAGCTCATCGAAGAATACATCCTTGAGAGAGATGTAATAAATGTAATGGATGTGAAAAAAACTGTAATAATTTAGCCCTCATTAGGTATTTAATTCCATGGATAAACCTCAGCTATATAATAGATATGAGGAAAGTGTTTGTGCCTGTCAGACACTTAAAAAAATAACCTGAGATGAAGAATTTACAATTGAAGACATTGACTTTAGCCATTTGTGAAATGGGTTTGCTTTTTCCCTTTTCCTACAGACGTATATGCTAGATGTCACGTGATCATCAGAAACAGATATCCGAGTGGGTGGGGAGGTGTGCTTTAGATTTCTCATTAGAAGACCACCAAACTGGTAATATTTTTATAGCATTTTAATAGCTTGATCAAATTGTACCTTTTTAGAGAAAAGGACCAAAATAAAAGAAAAATGAATTATGAACTACCTCTCAGTCTCTGGGGTTTGTCCTTTTCCTACCCTGATGTCAAACTTATGCATGGATTTCATTAAAAAAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000169131-ZNF354A:NM_005649:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.364 A=NA C2=0.163
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=4.8),PF079757=C1_4=WD(100=10.7),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=4.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)