RnoINT0168091 @ rn6
Intron Retention
Gene
ENSRNOG00000003634 | Zfp354a
Description
zinc finger protein 354A [Source:RGD Symbol;Acc:2967]
Coordinates
chr10:36590543-36599618:+
Coord C1 exon
chr10:36590543-36590641
Coord A exon
chr10:36590642-36598146
Coord C2 exon
chr10:36598147-36599618
Length
7505 bp
Sequences
Splice sites
5' ss Seq
TCGGTGAGT
5' ss Score
11.11
3' ss Seq
TTTGTTTTTTCCCTTTCTAGGAT
3' ss Score
13.29
Exon sequences
Seq C1 exon
CAGGATTCCTGTTTACCAAACCAAAGGTGATCTCCCTGTTGCAGCAAGGAGAGGATCCCTGGCAGGTGGAGAAAGAGGGCCCCAGATACTTCTCTCTCG
Seq A exon
GTGAGTGCCTAGGCCTGGCGGTCTTTGCAGGCCCCAGTGTGGCAAATAAGGAGAGGGCGCAGCTTAGAGTGTGGGTTGAGAAATGTCTTCAGGTTCTCAGTCCGTGAGAGGTGGTCAGGGGCTGGGATGGAGCTCAGTGGTAAGGACACCGGCCTCACACACGTAACACCAATTCCCAGCGCACACACCCACACACACTCACATAGACACGCGCACACAGGCCGCACACTTGCACACACTCACCTATGAAACAAAGTAAACAAAACAACTCCATAAATTATTAGCAGATTAGGTAGGAGCAAGGGAAGGAAACTGAAATCCGGCCCAGCTCTGCTGTTCTCTCCTGATCATGTCTCGAATGAGTTTCCTGGGATCTTTTCTCTTGTTGGTTGTCTCTGAGGAGGGTTTCATTTTCAGAGCTCATTTCAGAAGGTTGGTATATTTAAGAGATGATAGCGAATTCACTCAGGTAGATGTTCAAAGTGTAAAAGGAAAGGAATCGCTGGGAAGGCTATGGAGGGACCTTGTAACAAGTTCCTCAGTGTTGTTTTAAGAGCTTTGTTCTGCACATGGGGCCTGCAAGCATCTGACCTGTGAATGGCCACTGTGGATTCTTGGGTAGCTCTCGGAAAGCTGGTTCTAATAAATGATTCAAAGGCCTCTTAGTTAAACAGCTGGAGAAACTGCAGTCTGTCCTTTTTCTAGCAGCCACCATCACAGTAATAAAGACAGCTCCAGAGAGTGACAAGGAGCCAGGCAGGATTCTGAGTGCTGTGAGATTAGGTTGAAAGAAAATTGTGAGCACAGAAAGAAGGGTTAGGAGGCAACAATGTATCCTTTAAAATGAACCTAGGAAAAGTATCTATATTTGCATACAATGTTTTAAATTGTTACAAAGGGCTGTTACATTCAGGAAGTGCTGTAACATGCACTATGGGGGATACATTCAAAGTGAGGCACAGCCTGGCAGCCTTAGAGAGCCCCTGCAAGAAAGAAGGTAAAGCTAGCGGGGTCTAGATGAAGGCCCTGCTTCTGGCATCTAGGGAGAGCCTGTGTGATGAGTTTGGGGTAACTGTGGTTTCCATTTCAAATGTACTGAAATGCTTGGATCCGGATCTCTGGTGGAGGATTCTCTGAGATAGATGGGTTGGAACTCACAGGCGAGGTCAGCACCCTTGGACCCTTGATCTGACCAGCGGGAGGGATCCTGGGAAACTGTTTTTGCAAGATGGTTAAGAGAAAAGACTTTGTGAGCCAGACCTGAAGTGACCTGAAGAGAGGCTCCAGAGAGGTGTTGCCACGGTGATAGAAACTTGAGGCTGATGAACTGGGGAAGATCCCTCACTGGTGATTCAAGACACCCACTGTGGGCTTCAGCTTGCTTAGCCCTTCATAAATGCTGAGCAAGCTCTGTGCTAGGTCACCGTGAAATGGAAGTAGATGGGATGGAACAGGGTCCTGCTCTTGTGGAGTGATTGATGCCGTGAGGGGAGTAACGAAACCAAGCACCCACAGCCAGCCATGTGCAAAAGTCTAATGAAGACTAGTAGAAAATGACACATAGTGCTCTGAGAGTGCAGGGCAGAAGCCACTGGAGTCAGTGTCGTGTGTGTGTGTGGGTACGGGTGACACTTGAGTGTCACAAGCTTAGGGAGTGATAACTGAAAGAGCCAGCATTGACCTCGGAGAAAGGAAGAGAGGCCAGGAGACATTGGCAGGAGCAGATTTCCCTGGTGCCCATCACTTGGTTTGACCTGAGGATTTGAGAGTCTGAGGAGTCAAGAGCACCCTGGAGCTGGGTCAGGGAGCCTGAGGGCAAGAAGGGGAGAGGAGCTAGGGCAGATCTGAGCCCTCAGATCAGTCAGTGAGCCTTGGCCAAGAGAAGAGCCACGTGACACACCACCCTGTCCTCTCAAAGTCCTTGTATTATATGAGAGCCTTCTCTAGTCTAAAGCGAGAGATCCTGAGGCAGCAGCCACCATTGCCTTTTACATCCTTAATTATGTAGAAGCTGCCAGATGCCACCCCAGAGTAGGCAGAACACAGGTAATTAGGATTCCTGCAGGGAGGGAAATTAGCCCAAGCAGAGTGAGCCTGCAGTTAGAGCTGTCCTGAGAGAGGCTAGAAGACTTGATGAAATGGTCACTTGCCTTCCTCACTTGCCTGGGAGACCTGAGTGGATGACTGAGGAGTGAAATATCAAATGGAGTCACTTCCTGCTCCACTCTGTACAGGGTGGGGTGGAGTGAGGGTGTTGACTGTGCAGCCCAGGCTGACTTTGACTCTAGATTTCTCCTACTTCAATGCCCTGAGCACTAGGATTATACGTGTGCCTCTCTGTTCCTCTTGAGGAATGGCTGTTCTTTCTTTCTCTCAAACGTGAACTTGAGGTGGGAGGCCTGTGGTGTGCCTGGACTCCAGTACCCCTTCTCAGCAGGGGCTCACAGCCCACAGTATAGTGTAAGAACCTGAATGTTTGCACCCAAGATCATGATGTCAAGCAGAACCCAATTCTGAACCTGCAAAGTTATTTTTCCCTTCAAAACTAAAACAATAAAGCAGGGCTCAGTTCTTTAGTGCATTGGCTGCTTTTATAGAGATCCTGAGTTGAGTTCCCAGCACCCACATAACCATTTATAACTCCAGTTCTAGGCTTCTGATGCCCTTCTTTGATCTCTGTGTGCCTCAGCGATACACGTGGTACACATGCAGGCAAAACACCCTTACACATAAAAATGAGTAACTTTTTTTTAAAAAGTAAAACCAGCCTTTGTTGTCCCTGAGTTTGTAAGTTTTAAACTGGAGGTGAAAGGCCATGGCTCCAAGAGTCTCTGTGTCTTACTTTGGGACTCTTGCTTAAGAACTGGTCCAAAGTCTAAGCAGTGAGACTGTGCTTTTCCTGCGTAGCTAGACTACTTGTGTATCAAATAGATTTGGCTCCTGTCCAAATGCAGAAATAATTTTCAATTCCAGAAATGGTCTAGTAATCCCATCTCCAGCAAGAAATTCCCCTCACCCCCGTGTCTTTCTCTTTTACTGTCTTTAATGTCAAAATCCACTGAGAGTCTGCTGAACCATGTGGGGTTGACAGCCATCTGCTGGCCCATCAGTGAAGCCTCTGGGGTTGTATCTGTTCAGAGGAAGGGCAGCTCTTCCTGAGTTTACACAGGTGCTACTGCAGGGGTTAGCCACACCCTTAAAACTAGTGCCCTCCATCCCATGGGGCACAAGGCAGAGTCCTCACTGTGGTGGTTGCTCTTATCTCCTGTTCTGCCTGAAGGCTTTTGTGCCTGACTTTCTCTGTCTGTGCCTTCTCTTTTTCTCGATGGCCAAGAGCTCTTGTGGTTACCTTGCTGTGTTTCACAGGCTTCTGCCCAGGTGCCACTTTGTGGAACAGGCTCTGGTCATCTAGAACAGGGTCCCTTTCTCCACGCTCTTCGTCTCAGCAGACTGTTCCTTCCACACGATCACTGCATGCCATATGTGCACATGATCTCTCTCTTCCTCTGCACCTGTGCGTGGAGGCAGCTTGTTCCTTATTTCTGTTTTCCAGTGCTGGCCAGAGTAGGCTTCTGGTTATGGAGAGAATATAGGAATAACTTGCATGAAATGAAAAGCCCTCCCTACATAGCAAAAGCCAAATGAGCCGGTGAGTAGTACAATATTAGAGAATTTCCACAGATGCCTCTACTCAGAGCAGTTCAGTTTACTTGTGGTTATGATCTATCACAAGGGTGAGCCTACCTGCAGACAGTAGTGTAGCTTGGGTAGGGTTGTGTGAGAAGTGTTGACACGCTTATGAATGAAGTGATTGATGGCGGGATTGCTTTAGGCTTAGCTTTTTGGAAGGGAAGTAAGCGTTCATAGTGATGTGGTAGAGACAGGTTTGACATGGCCCTGCTCCCTCTGAGATACGAAGACTGATGCTTCTTTCAACCTATGTAACCTGTGGCTGACCCTTTAAGATCCTGTCTTGAGTGTCAGACAACTCTAGCCAGCGCTCACAGCCGGTCTAACCTGCACCCTCACTCTCCAAGGAAATCTTGATGGCTCTCTGTGCTCGTATTACCCACTTTTGCATTTTTGTTGTAGCAATGCTCACAGTGTAGCACGATTTCTTCTGTTTTGAATACAAGATCTCACTCTAGTCCTGGCTGGACTGGAACTTACTGTGTAGCACAGGCTGGCCTTAAACTACTACCACGTCTGCATAGACTCCCAAGTGCTGAGATTGTAAGCACGAACCACCATGCCCATCCATGACTACCTGCTGATTTCTTTATAACGATAAACTTACTAAACCTCACCAATGCCTAGGGAGAAGTCTGGGTATTTATTTTTTATTTGATAAATAAATAGAATGAGGAATCAATGCTTTTTGAAGTAGTAAGGGGTGCTTTATGTGTTGAGGCAGGGGTTAGTTCTTATAGGAAACCATACCAGAGAGATGAGAATCTCAGGTCAGAGGAACAGTGAGTTTATCGCAATGATCCCTCTAAAATAAGATCCTGAACTTGGATTAGTGATGGCTGTTAGAGACGGTTTACTGGTGGGATGTAAGAGAATTTGATGGCTGTCTGCCTGTGTATGCAGGGAATAAGAGATTGAAAGATGAAAATAAAAATTTTTGGAAAAGCTACTAAAAAGTTTACAGGGTCAATCTAAACAGAATCAGAAAAGGCCTTGACAAGTAAGTTGCTTTGGGCTCCAGAGCTGGTTCTGTGGCTAAGAGTGCCTGCTGCTCCTGCAGAGACCTGGAGTTTGACTCCTAGTACCTTCACTGAGTGGCTTACATCCAGTCATAACTCCAGCTCCAGCAGTCCAGTGCCCTCTTCTGGCATCTGTAAGTAGCATACTCACATGACCATGCACACATGGGCACAAAAATCTTTTAAAAATAAAATAAATTGCTTCAGTAAAATAGTGTATAAGAATGGTTTGCCAGAGGCAGAGGTGCTGAGAGACTGCAGACAAGCAAGTACAGCACTGCACAAGATGCAGGCCACTGAATTTAGAGACGAAGGAAGGCACTGCCTGGGTAGCAGTGAAAGGATTCCTAGGTAAAGGCAGTGGCCTATTCCTCCAACAAGGCCCCACCTCTTCTCTATGAGTCCCACCACCTCTATGATCCTGTTGGGTTGGGAAGCCATTGATGATCCCATTACTACCCTAAACCAGGTGACTTGTGCCAGCTGGATATACCGGGACTTGCTCAAAACTGTTAATAGGTTCACTGGCGGGTAAGAACAAACAAAAGAAAAAAATATCACTAGCAAGCAGCAAATACCCAGCTACCTACATTAGTGGTGTCTGTAGCTGTGCCAGGTGGCTCCCCCCAGGAGAACACTTCAGGTATGAGCAGGCTGATTTCAAAAAGAACATATTAAATGCTCTCTTTAGAAGAGTTACCATGGTGTCACTTACAGCAGTGGAAACCCTGACTAAGACAGTGGGTACGTGTGTGTTTATGTTCTCTGTGTATATCTGTACACGGATGCTGGAAAGGAACATCAGATATTTTCTTCATTTGCTCCCCATCTTCTTTTGAGATGAGGTTTCTCACTGAACTTAGGCCTTGCCGCTTTGGGTGGAGCAGCTGGCTAACAGGATCCAGGGCTCCTCCTGATTCAGCTCTCCGGCACTGGGATTAAGTCCAGCGCACTCTGCTTTTTACCATTGTCTGCAGGATTGACTCAGGTCCTCACGCTCTTAGAGCAAGCCTTTATTGACTGAGTTAAGGCGACTGCGGCTGTGAAGAAACACCGTGGCCAAAGCAGCGTAACAAGGAAAGGATTACACAGCTTACACTTCCACAGCACAGTTCATCATCAAAGGACATCAGGACAGGAACTCAAGCTGGGTAGGAACGCGGAGGCAGGAGCTGATGCAGACGCCACAGACGATGGGGCTTAGTAGCTTGGGCCTCATGGCTGGCTTAACCTGTTTTTTTTTTTAATAAAATCTAGGATCAGCCCAGGAATGGCACCACTCAGTGGGCTAGCTAGGCCCTTCCCCATCAATCACTAAGTCAAAAAATGCCCTACAGGTGTGCCTATGACATTTTACGGAAGCATTTTCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTTTCTATCTTTTTTTTTTGTTGTTGTTTCTTTTTAAATTAAGTTTTTTGTTTTTTTTTGTTTTTTTTTTTTTGTTTGTTTTTTCGGAGCTGGGGATCGAACCCAGGGCCTTGCATTTGCTAGGCAAGCGCTCTACCACTGAGCTAAATCCCCAACCCCAAATTAAGTTATTTATTTACTTTACACACCAATCAAAGCTTCTCTTCCCTGCTTTCCTACAAGTCCCTCCCTCTGACCCCCACCACCACCATCACAATCTACCTTACCTACCCTTCTCCGAAGAGGGGAGGCCTCCCATGGTTATCAACCAGGCTTGGCATATCAAGTTACAGTAAGACTAGGTACATCTTCTATTGAAGCTAGAATAGGCAGCCCAATTAGGGGAAAGGGTCCTAAAGGCAGGTGACAGAGTTTGAGATAACTCTTGCCCACATGAAGACCAAGCTTCACAGCTGTTACTTAAATGCAGAGGGCCTAGGTCAGTCTCTTGCATGCTCTGTGTTGGCAGTTTGGTCTCTGTGTGTACCTTTGGGCCCAGGTTAGTTGGTTCTGTGGGTTTTCTTGTGGTGCTCCTTCAATCCCTCCTCCCCATCCTCCACAGGATTTCTCCAGCTCTGCTTACTGTTTGGCTGTGGGTCCCTGCATCTGTTTCCATCAGTTGCTGGGTGAAGCCAGATGTGGTAGCACATGCCTATATTCCCAGTACTCAGAAGGTAGAGGCAGGAGGATTGCTATAAGTTCCAAGTCAGCTTAATCTGTCATTTTAGGCTATATAGTAAGACTCCATATCAAAACAGAAGTGATATATATAGAGAGATGTATGTATGTATGAGATTTGAGAGAGGTAGAACACGCTGATCTGCTTGTTATATGTAGAGAGGTACAGAATAATAAATCAGTATGTCAGAAGTGGTCACCTGAAATCCCAGCTCTCAGGAGGTCATGAGTTCAGGGAGGCTGGAGATTGATAGTCTGTCTAAGAAAATAGGTAATGCTGGCTGGAGAAATGGACCATGTATATGTAGAGTCAAGCAAGGATTCTCATAAGTAAACTTTTGAATTGAATCTGAAGATGTTGTTGGCAGGAAACAATGAGGGCAAACTTAGCAGGTAACAATGTAGGTGACTCTCATGACTTCTCTGGGTTCTAGATAATACATTTTCCAACTCCTCATCCCCATTTAATCACTGTCTTGAAATGGGTTTACTTTATTTTTTCTTCACTCTACTACTTCTGTTCCCGTCAATCGTGTTTCTATATGAACTCTTGGATTCCACCACACACCAAGACTCTATTTAAATAGCATTAGTATTTATTCACTCTACATATCTAGTCTCAATAGTTAATTTTTATATCACATCTTTGCTTTGTTTTTTCCCTTTCTAG
Seq C2 exon
GATTGAAGTGCAGTCATAGAACCACTAAGTCAACTCAAACACAAGACTCTTCATTTCAGGAACTGATTGTAAGAAAATCTAAAAGAACCTTTGCCTTCGAACCTTTGAACATGAAGTCAGAAAATCTTTTCATACATGAAGGCAAATTAGAGGAAAAGTGGGATAAGAATACTTTGACTGTAGAAAGAAGCCATAAAAACAATGAATTTAGCCCAAAGTCCCATAGAGAAAAACGGTCCTCAGAATGTAAAAAGCAGATATCTTATTTATCTAACCCACCAGGAATCACACCGGATAAACGCTATAAATGTAGCATGTGTGAGAAAACCTTCATTAACACCTCATCTCTTCGCAAACATGAGAAAAACCATAGTGGAGAGAAATTATTTAAATGTAAAGAATGTTCAAAAGCCTTCAGCCAAAGTTCAGCCCTTATTCAACATCAAATAACTCACACTGGAGAGAAGCCTTACGTATGTAAAGAATGTGGGAAGGCCTTCACTCTCAGTACGTCCCTGTATAAACATCTCAGAACCCACACTGTGGAGAAATCCTACAGATGTAAGGAATGTGGTAAATCCTTTGGCCAAAGGTCAGGTCTTTTTATACACCAGAAGATCCATGCCCGAGAAAACCCTCATAGATATAACCCAGGAAGGAAGGCATCCGCTTCCCTCTCTGGATGCCAGAGAGCTCATTCCAGGAAGAAGACCTACTTGTGTAATGAATGTGGCAACACCTTCAAGTCTAGCTCCTCCCTCCGTTACCATCAGAGAATCCACACCGGAGAGAAACCTTTCAGATGTAGCGAATGCGGCAGAGCCTTCAGTCAGAGCGCATCACTTATTCAGCACGAAAGAATCCACACGGGAGAAAAGCCCTACAGGTGTGGCGAGTGTGGGAAAGGCTTCACTTCTATCTCAAGACTCAATAGACACCGGATAATTCATACAGGAGAGAAATTGTATAATTGCAATGAGTGTGGCAAAGCCTTAAGTTCCCACTCAACTCTTATTATTCACGAACGAATCCACACTGGAGAGAAACCGTGTAAATGTAAAGTTTGTGGGAAAGCCTTCAGACAGAGTTCAGCTCTGATCCAACATCAGAGAATGCACACTGGGGAAAGACCCTATAAATGTAATGAGTGCGGGAAAACATTCAGGTGTAACTCATCCCTAAGTAACCACCAGCGAATCCACACTGGAGAGAAACCTTATCAATGTATAGAATGTGGGATGTCGTTTGGACAAAGTTCTGCTCTTATTCAGCACCGAAGGATTCACACGGGAGAGAAACCGTTTAAATGTAACACATGCGGAAAGACCTTTAGGCAGAGCTCCTCACGTATAGCACATCAGCGAATTCATACTGGGGAGAAACCCTACGAATGTAACACGTGTGGGAAACTTTTCAACTATAGGTCATCCCTTACCAATCATTATAAAATCCATGTGGATGAGGACCCTTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003634:ENSRNOT00000045596:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.130
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=5.3),PF134651=zf-H2C2_2=WD(100=5.1),PF079757=C1_4=WD(100=10.6),PF134651=zf-H2C2_2=WD(100=5.3),PF134651=zf-H2C2_2=WD(100=5.3),PF134651=zf-H2C2_2=WD(100=5.3),PF134651=zf-H2C2_2=WD(100=5.3),PF134651=zf-H2C2_2=WD(100=5.3),PF134651=zf-H2C2_2=WD(100=5.3),PF134651=zf-H2C2_2=WD(100=5.3),PF134651=zf-H2C2_2=WD(100=5.3),PF134651=zf-H2C2_2=WD(100=4.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]