MmuINT0179071 @ mm10
Intron Retention
Gene
ENSMUSG00000020364 | Zfp354a
Description
zinc finger protein 354A [Source:MGI Symbol;Acc:MGI:103172]
Coordinates
chr11:51061403-51071362:+
Coord C1 exon
chr11:51061403-51061498
Coord A exon
chr11:51061499-51069222
Coord C2 exon
chr11:51069223-51071362
Length
7724 bp
Sequences
Splice sites
5' ss Seq
TCGGTGAGT
5' ss Score
11.11
3' ss Seq
TTTCCTTTTTCCCTTTCTAGGAC
3' ss Score
14.64
Exon sequences
Seq C1 exon
GATTCCCGTTTACCAAACCAAAAGTGATCTCCCTGCTGCAGCAAGGAGAGGATCCCTGGAAGGTGGAGGAAGAAGGCCCTGGAGGCTTCTCTCTCG
Seq A exon
GTGAGTGTGTGCGCAGGCCTGGCAGTCTCTGCAGGCTCCAGTGTGGTGAATAAGGAGAGGGTGCAGCTTAGAGTGTGGGTTGGGAAATGTCTTCAGGTTCTCAGTCCACAAGAGATGGCCGGGGTGGAGGGGGTGGGAGGCTGGAGAGACAGCTCAGTGGTTAAGAGCACTGACTGCTCTTCCAGAGGTCCTGAGTTCAAATCCCAGCAACGACATGGTGGCTCCCAACCGTCTGTAATGAGATCTGACACCCTCTTCTGGTGTATCTGAAGGCAATGACAATGTCTTATCTGTAATGAGATCTGACACCCTCTTCTGGTGTATCTGAAGGCAATGACAATGTCTTATATATATAAAATAAATAAATCTTTAAAGAAGAAAGAGGTGGTCAGGGACTGGGATGGAGCTCAGTGGTAAGAACACCTGTCTAACACACAAAAAGCCCTGGGTTCAACTCCCAGCACGCGCGTGCGCGCACACACACACACACACACACACACACACACCAATGAAACAAAGTAAACAAACAACTCAATAAATTATCCGTAAATTAGATAAGAGCAGTGGAGGGAAACTGAAATCTGGGCTAGCTCTGTTATTCTCTTCTGATCATGTCCCGAATGAATTTCTTGGGGTCTTTTTTTTCTTGTTGGTTGTTTCTGAGGAGGGCTGCGTTTTCAGAGCTCATTTAAGAAGTATGGTATATTTAAGGGATGATAAAGAACTCACTCAGGTTGGAGTTCAAAATGTAAAGGAAAAGGAAACGGTGGGAAGGCTATGCATGTAGGGATCCTGTAACGAGGGCCTTGGTGCTGTTCCAAGAGCTGTGTCCTGGACATGGGAGCTGCTAGCATCTGCACTGCAAATGGCCACTGTACTTGTGGGTAGCTCTCAGAAAGCTGGTTCTAATCAGAAACAATTGAAAGGTCTCTTAGTTAACCAGCTGAAGAAACTATGGTATGTCCTTGTTCTGACAGCCACCATCTCAGAGAGTGTCAAGGAGTGAGGCAGGTTTCAGAGCACTGTCGAGATTAGATTGAAAGAAAATTGTGTGCACAGAGAGAAGGGTGAGGAGGCAACAATGTACCCTTTAAAAATGGGCCCGGAAAAAGAGTCTTTATTTGTATATAATGTTGTAAGTTGTTACAAAGAGCTGTTACATTCAGGAAGTGCTGTGAGGTGCACTATGGAGGATGGATTGAACTTGAGATGCAGCCAGACAACCTTAGGGCGCCACTGCAGGAATGAAGGAAAAGATAGCGGGGTCTAGATGAAGGCCCCTGCTTAGGGCTCTAGAGAGACCCCGTGTGATGATTTGGGGTGGTGGTGGTTTTCATTCAATGTATAAGTGAAGTGCTTGGATACGGATCTCTGGTGAGGGGTTCTATAAGGGTTGGAACTCACAAGTGAGATCAGAACCCTTGGACCCTTGAGCCGACCAGCTGGGGGTTAGGATCCTGGAAAACTGTTTTTACAAGATGGTTAAAAGAAAAGACCTTGTGAGCCAGACCTGAAGTAACCTAAAGGGAGGCTCAACAGAGGTGTTGCTATGGTGATAGAAACTAAGGGCTGATGAGTTGGGGAAGATCCCTCACTGGTGAACTCGCAAAGTTACTTTCCCCTTCAAAACTAAAATAACAAATACAGGGCTCAGTTCTTTAGTGCATTGGCTGATTTTGTAGAGAACCTGAGTTCAGGTTCCATCACCCACCTAACCATTCATAACTCCAGCTCTAGGGCTTCTGATGCCCTTCTTTGATCTCTGTGTGCCTCAGGGATGCATGTGGGACACCCTTTTTTATGCACCCTTACACATAAAAAATGTGAAACAGCCTTTGTTGTCCCTGGGTTTGTAAGTCTTAAACTGGAGGTGAGAGGCCATGGCTTGAAGGATGTCTTCCTTTGGGTCTCTTGCTTAAGAATTGGCGCAGAGCCTAAGCAGTGAGGCTGCGCTCTTCCTGCATAGCTACACTAAGAATCATGGGTGAAACCACTTGTGTATCGAACAGGCTTGGCGGGTGTCCAAATGCACAAATATTCCGAAATCCGGACATTTTTAAATTCCAGAAATGGTCTAGTAATCACATCTCCAGTGAGAAGTCCCCCCAGCCCCCTTTTCTTTTCCTTTTATCATTTTTAATGTCAGAAGCCACCAAGAGTCTGCTGAACCGTGTGGGGTTGTCAGCCATCTGCTGGCCTCTGGGGTTATAATCCGTTCAGAGGAAGGCAGCTTTTCCTGATTTTACACAGGTGCTACGATGGAGGTCAGCCACAGCCTTAAAACTAGCGACTTCCGTCCCATGGAGCCCAAGGCAGAGTCCTCACCATGGTGGTCTCCTGTTCTGCCTCAAGGACTTTGTACCTGACTTATCTACCTGCCTTCTCCTTTTCTTGATGGCCAAGAGCTCTTGTAGTTGCCTTCCTGGGTTTCCCAGGATTCTGCCCAGGGTTCCTTCCTCCATGTTCTTCACCTCAGCAGGCTCATTCTCCTTCCACACCATCCCCGCATAGCACATGGGCGCGTGATCTCTGTCTTCCTCTGCATCTGTATCTGGAGGCGGCTTGTTTCGTTTATTTCGATTTTCCAGTGCTGGCAGAGTAGGCTTCTGGTTATGCAGAAAATACAGGAATAACTTGCACCATATAAATAAAACGAAAAGCCCTCCTTAAATAGTGAAAGCCAAATGAGCCAGTGACTAATTCAACATAGAGTATTTCCACGAATGCCTTTACATGAGAGTCATTTGGCTTATTTGTGGTTTCTGTGTATCATAAGGGTGAGACTACCTGCGAACAATGTTTTTAACTTGGGTAGGGTCATGTGGGTAGTTTTGACACATTTATGGATGAAATGGTTGATAGTGGGAATTACTTTAGGCTTACTTTTGTGGAAGAGACGTAAGGGTTCATAGTGATATGAGACAGGTTTGGCATGGCCCTGCTCCCTCTGAGATACCAAGACTGATGCCTCTTTAGCCTGTGGTTGACCCTTGAAGATCCTGCCTTGAGTGTCAGATAACTCTAACCAGCACTCACAGCCCATCCTCACCTGCACTCTCACTGTCTAAGGAGAATTTTGGTGGTTCTCTGTGCGCATATTACCCACTATTAGTAATGATCACATGGATGGGTATGGAGGCTCATGCTTGCAGTCTTGGCACTCAGGAGTCTTAACGCAGAAGTGATGGTAGTTTAAGGCCAGCCTGTGCTACATAGTAAGTTCCAGTCCAACCTGGACTAGAGTGAGATCTTGTATTCAAAAAGAAGAAATCATGAGGCAATGTGATCATTACTTAGAACCTAAGTCCTAACCTTTTCACCAAGTAACTCAGCTGCACTTGGTTCTCAGAGAGAGCAAAGGCGGAGTGGTGTGTTCGTAGATGTGGGGGTTTCTGAGTGGATCGTACAGAGCAGTTAGCATATCCACAACCTGTGACTGGCCTGGGCCCCAGTGGAAAATGAATGGAGAGCTAAGGCTTTGGCACGTGGAAACTGACATGGGTGGAAGAGAGTTGATGCAGGTCCTTGTAGCTGGGACTGCTTTCATTATAAACAAAGGTTCTCGTGCTCGCGTTCTTATTCCGCTTGGAACCAGGTTTCACACGGGCTTTCCAGGTCTTCCTGCCTTTTCACTTTGCCTTATTTCCTGAGACTTCCAGTTGGTCTCTCATTTACTGCTCCACTAAAAGAACTCTTCTTAAATTCCATGCTACCTCCATCTCCTGCACTTAAGACCAAACTCCACAGCTGTTACATCTGTGCAGAGGGCCTAGGTCAGTCCCTTGTATGCTCTCTGGTGGCACTTCAGTCTCTATGAGCCCCTGTGGGCCCAGGTTAGTTGACTCTGTGGGTTTTCTTGTGATGACCCTTCTGGCTCCTTCAATCCTTCCTTCCCCATCTTCTACAGGATTCCCCAAGCTCTGCTTAATGTTTGGCTGTGCATCTCCGCATCTGTTTCCATCAGTCACTGGGTGAAGCCTCTCTGATGACAGTTATTCTAGGCTCCTGTCTGCAAGTATAGTAGAATATCATTAATAGTATCAGGGGTGGGCTCCCTCTCATGGCATGGGTCTTAAGCTGGGCTGGTCATTGGTTGTCCCTTCCCTCAAATTCTGCTCCATTTTTAACCCCTCCATATCTTGTAGGCAGGACAAATTGTGAGTCTAAGGTTTGTGGCTGGGTTGGTGTCCCAGTTCCTTCACTGGATGTCTTACCTGGTTACAGGAGATGGCAGGTTCAGGCTTCATATCCCTCATTGCTAGGAGTCTTAGATTTCTGGGGGGGGGGTCCATTGTCCTAGATTCCATTGTCTATGCTTCCCCCACCCCAACCCCAATCCTTTTGTCTCTCCCAGTACTGTCTCTCTCTCTCTCTGTCCTCCCCCTCCCCACCTCATCCCTCCTATTCCCATCCCCACCTTCTCCCCAACCCAGGCCCCTCTCTCAGGGAACATTTTCTTAATTAAGATTCCATTCTCTCAGGTGACGTTAGCTTGTGCCAAATTGGCATTAAACTATCCAGCACACCAACCAAGCCGTATACCCAAACCAGTCTTCAGGGTATTTGACATGGCTAATCATTTGTTCCTCTCTGGCTCCTGGAATACCATCATCTCCCAGTTTCCTTAAATGTTCAGGAAGTCTGCTGATTTCTTTCAGTTCTCTAGCTTTAAATAGAATTTGTAGGCTGATGATTCCCAAATGCCTGTCTTCAGCTCTGACCTTTCCCCAGGTCTCTAAAGCAGCACACAGCTATTTCAGGGTCTCCTTGCCTTCTCCTCTGAAGCCCCTCAGCTATCACAAGTAGACCTGAAGCAGACCCCTAGGGCTTCCCATCCTCTCCTCCCTCTTCTTGGTAATTGGTGCCATAATTCCCTTTCAGAATTCATAGGCATGATCTTAATTAATTGTCTTCTTTCCTTCCTAGTACTCTGTTAGGCCATTAATCTCAGTCCTGAGAGCAACCTCCTCAGCTCCCTAAAACCTTCATCTGCTTTCACTTCTGCCCTAGGTCTCTCTGTTCTCTGCCAACTCAAATAGTGCATATTTCCCCAGGCATCCTATCGAGCTTGGTATAAAATTCCACAGCCTTCACCAATATTCAGGAGGCCTTCCATACTTTGTTCTTTAACCATTTTTCCTTCTGTTCAGTACATTCTAGGCAAGGTCAGGGTCTTTGCTCCGTCCAGAAGTCAACTATACTTCTGTTTCTCCTGATGGCTTTGCCTGGGACTCTCTCCAGATAACCATATGGCTTCTATGTACTTGTTTGTCACTGCATCCTCTCTGCCCATCAAGCACACACATATGCACATGCACACATACAAAAGTGTACGTTTCAGCAATGCCGGAACCTTGTCTCACTCAGAACATTATCCAGCCACAGTGTGAGAGAGTGAGGGTGAATGGAAAGGTGGTCTCTACATATGTAAAGATAGACAAGTAAAATTAAACTGGACTGTTCCAGAAACTGCTTCTAGTCCAGCATACCTGACAGTAGCCAGGGGAGGGAGGTGTTGGCAGATGTAGACAAATCTTTTACACTTTTACACTTCACTGTGGGAAGAATCCTGGACCTCATCAATAAATCATTGGCATTCTAACAGAGATCTTAAAAGAACATTCAGCACGGGAAGATCTGGATTTAGGCAGGGTGATCTGGTTGTAGTGTAGAGAAAGTTGTCAGAGGCAAGACTCAAAGCTAGGGCATTACTTAGGAGACCATGGTAGAGACAGTAATGCATAGGAAAGAGAATGCCTTCTCAGGGCCTCTTAGTCACTGTTCTATTGCTACAAAGAGACACCATGACCATGACAACTCTTATAAAAGAGAGCATTTAATTGAGGGCTTGCTTATAGTTTCAGATAAGTTCCATAGCATCATGGCAGGAAGCATGGCAACATGCAGTTAGACATAGTGCTGGAGCAGTGGCTGCGTAGATATCCTCATCCACAGGTGGCAAGAAGAGAGAAGGGAGACAGACAGACAGACAGGGCCTAGCATGAGCTTTTTGGAATGTCAAAGCCCACCACTAATTACATACTTCCTTCAACAATGCCACACTTCCTAATCCTGCTAATCCAAACATTTCTATTCCCTGGTGACTAGACATTCAAATATATGAGCCTATGGAAGCCATTCTTATTGAAACTAAGACATTTTATCTATGGGGAAGATGCGAGTTCAGTTGCTGACTGCAGTGCTCAGAACTCTGGCAAGGGCAAAGTATCAGAACTGTAGCCTTTCTTTATAAGAAGGCCTAAGGCAGTGTCTTAGACTCTTCATCGCTGTGACAAGTACCTGGGAGAAAATGTTTAAAGGGGAGAGAATTATTTTGTCATGTGGCTTTATGGATTTTAGTCCATAGCTGCTTTGCTCCCTTGCTTCTGGGCCTGTGGTGAGGCAGGGTATCATGTGGGTGAGCGTATGGCAGAAGACAGCAGCTCACCTCAGGGTAGTCCAGAAGTTGGGGGAAGCAGGGATAAGATATACAGGATATTCTTCCATTAACCTATTCTTCAAAGAAAGTTCCACCTCCTGACTTCCACCACTTCTGTATGATACCATTGGGTTGGAAACCCATTGGTGATCCAGTCACTACCCTAAACCAGTCAGCTAGTAGTGAGGCTTTTAATATATGAGCCTTTAGTTGACAGTTCAAACTCAAATCATAACACCAGTCTTGCTTGATGCTTGGATAAGGCTGTCTTTACAGCTTACAGATCTTGACATTATGCCTGTTTTGTGTCACCTCTGTAGAATTAATGTAATAATGTCTTCCCGGGTGAACTAGTTTAGAATTCTCTCTAATCTATGTTGTGTTTGAGAAGACAGGTTCTATGAGGACTTGTGACTAATCTATATGAAATTCATGTTTAAGTGGTCAAGACTACTTGACTTTCTTCAAATTAGGTAGGTATAAATAAGAAAAAAAATTACTACACAAGCCAGATGTGGTAGCACATGCTTATATTCCCAGTACTCAGAAGGTAGAGGCAGGAGGATTGCTACAAGTTCCAGGCCAGCCTAATCTGTCAACTTAAGCTGTATAGTGAGACTCCATATCAAAACAGAAGTAATAATTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGAGATACCATCAAGAGGATTTGTAAGCGGTAGAATGTGCTGATCTGCTTGTTATATGTAGAGAGGTACAGAATAATATATCAGTACATCAGAAGTGGTCACCAATAATCCCAGCTCTCGGGAGGCTAAAGCAAGAGGTCATGAGTTCAAGGACAGCTACATGGAGATTGAGATTCTTCTGTCTGAGAAAATAGGAAATGCTGGCTGGAGGAATGGACCATGTATGTTTGGAGTCAAGCAAGGATTCTCATAGTAAACTTTTGAATTGGATCTGCAAGATATTGTTGGCAAGAAACAAAGAGGGCAAACTTAGAGGTAACAGTGTAGGTGACTAACGTGAGTTCTCTGGGTTCTAGATGCTACACTTTCCAGCTCCTCGGCCCTGTTTAATCGCCATCTAGAAATGGATTTGCTTTTTTTTCCTTCACTTTACTTCTGTTACCATCAATTTTGTTTCTATATGAACTCTTGGGTCCACCCTCTATTTTTAACCACACACCAAGCCTCTATTTAAGTAGCATTAGTATTTATTCATTCAACATGTCTAGTTTCAATAGTCAATTTTTATGTCACATCTTTGGTTTCCTTTTTCCCTTTCTAG
Seq C2 exon
GACTGAAGTGCAGTCAGAGAACCACTAAGTCAACTCAAACACAAGACTCTTCATTTCGGGAACTGATTATGAGAAAATCTAAAAGAAAAGAACCTTGGAACATGAAGTCAGAAAATCTTTCCATACATGAAGGCAAATTAGAGGAAAAGTGGGATGTGAATGCCTCGACTATAGAAAGAAGCTATAAAAGCAATGAACTGAGCCCAAAGTCACATAGAGAAAAAAGGTCATCAGAATGTGAAAAGCAAATATCATATTTATCTAATCCATTAGGAATCACCCCAGATAAACGCTATAAATGTAGTATGTGTGAGAAAACTTTCATTAACACCTCATCTCTTCGTAAACATGAGAAAAATCATAGTGGAGAGAAATTATTTAAATGTAAAGAATGTTCAAAAGCCTTTAGCCAAAGTTCAGCCCTTATTCAACATCAAATAACTCATACTGGAGAGAAGCCTTATGTATGTAAAGAATGTGGCAAAGCCTTCACTCTCAGTACATCCCTGTATAAACATCTAAGAACCCACACTGTAGAGAAATCCTACAGATGTAAGGAATGTGGTAAATCCTTTGGCCGAAGGTCAGGTCTTTTTATACACCAGAAGGTCCATGCTGGAGAAAACCCTTATAAATATAACCCAGGGAGGAAGGCATCTACTTCCCTTTCAGGATGCCAGAGAATTCATTCCAGAAAGAAGACCTACTTGTGCAACGAATGTGGCAACACCTTTAAGTCTAGCTCATCCCTTCGTTATCATCAGAGGATCCACACCGGAGAGAAACCTTTCAAGTGCAGTGAGTGTGGTAGGGCCTTCAGTCAGAGTGCATCACTTATTCAGCATGAAAGAATCCACACTGGAGAAAAGCCCTACAGATGCAGTGAGTGTGGGAAAGGCTTCACTTCCATCTCAAGACTCAATAGACACCGAATAATTCATACGGGAGAGAAGTTTTATAATTGCAATGAGTGTGGCAAAGCCTTAAGTTCCCATTCAACTCTTATTATTCACGAAAGAATTCACACTGGAGAGAAACCGTGTAAATGTAAAGTTTGTGGGAAAGCCTTCCGACAAAGTTCAGCTCTGATCCAACATCAGAGAATGCACACTGGAGAAAGACCCTATAAATGCAATGAGTGCGGCAAGACCTTCAGGTGTAACTCATCCCTAAGTAACCATCAGCGAACCCACACTGGAGAGAAGCCGTACCGATGTCAGGAATGCGGGATGTCATTTGGTCAAAGTTCAGCTCTTATTCAGCACCGAAGGATTCACACTGGTGAGAAACCCTTTAAATGTAACACGTGCGGGAAAACCTTTAGGCAGAGCTCCTCACGGATAGCACATCAGCGAATTCATACTGGAGAGAAACCCTATGAATGTAACACATGTGGGAAACTTTTCAACCATAGGTCATCCCTCACCAACCATTATAAAATTCACGTGGATGAGGACCCTTAAAAATACATTTGCAGGTGTAAAAGCCTTAAACCAAAGCTCTTCAGAGAATATCTTGAGAGATGTAATAAACATAATATGGGGGGTCTCTATAATCATTTAGTTACTGTCAACTAAATTCCATGGATAAGTTTTATGTAACAGGTAGGAACAAAATGGTCATGCCTGTCTAACACTTTTAAAAATTACTTGAGATCCAGGGGTTCATACATGTAGCTACTGGGACCCAGAGACATGAGGATTGCTTGACTCCATGAGTTTGAAGCAGCCTCAGCAAACCTAGGGAGGTTTCCATCTCAAAAGATCAGTGACCTGAAATGGAGAGTTCACAGTTGAAGACCTTGACTTCAGGTATTTGTAAAATGGTGCTTTTCTCTCTGCAGCAGTGTGTGCTAGAAACAGTTGTAATTATAGGCATCTAAGTGCACAGAGGAGTGCGCTGGACTTCTCAGTAGCAAAACACTAAACTCTACTGTGGTGATATTTTTATACCACTTTAATAACATTCAAAAGGGATCAACTCATTTTTAAGAAAAAAGAGCCAAAATAAAAGATTAAAATGAGCTGTAATCTACCTCTTAAGTCTCTGGAACATCTCCTTTTCTTGACCGGATTTCAAATGTGTGTGGATATTATTATAAATGAAAAATAAAAAGCTCATCTCCTGGTATTGTGAATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020364:ENSMUST00000102766:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.200 A=NA C2=0.139
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=5.3),PF134651=zf-H2C2_2=WD(100=5.1),PF134651=zf-H2C2_2=WD(100=5.3),PF134651=zf-H2C2_2=WD(100=5.3),PF134651=zf-H2C2_2=WD(100=5.3),PF134651=zf-H2C2_2=WD(100=5.3),PF134651=zf-H2C2_2=WD(100=5.3),PF134651=zf-H2C2_2=WD(100=5.3),PF134651=zf-H2C2_2=WD(100=5.3),PF134651=zf-H2C2_2=WD(100=5.3),PF134651=zf-H2C2_2=WD(100=4.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types