HsaINT0187143 @ hg19
Intron Retention
Gene
ENSG00000147124 | ZNF41
Description
zinc finger protein 41 [Source:HGNC Symbol;Acc:13107]
Coordinates
chrX:47305561-47315415:-
Coord C1 exon
chrX:47315320-47315415
Coord A exon
chrX:47308874-47315319
Coord C2 exon
chrX:47305561-47308873
Length
6446 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
TTCTTTCATTTTCTTTTTAGGTG
3' ss Score
12.05
Exon sequences
Seq C1 exon
GGTACCAAATTCCCAAGTCAGAGGCTGCCTTCAAGTTGGAGCAAGGAGAGGGGCCATGGATGCTGGAGGGGGAAGCCCCACATCAGAGCTGTTCAG
Seq A exon
GTGAGTGAGCATGACCCAGACAGATGGGGACATGGAAGTCAGTATCACTTTCCCTAGGAAAGCCCGATGCCTTTGAAACACTCTGAAGATAACCCATCTTGAAAGTTCTAAACTTTTGGAGTCAATTGGAGATAGTTGACAATAGCCCTCAAATACCTAAATGCCATTTCCATGTATGACCCTTGCCACATTATTGTCTTCTTTGATTGGCCTTTTGGCAAGAGAGCTGTCTCTAGTCTCTGTACTCTGTATCACATACCACCCTGTCTTATCTAGGACCTTTTTATTCTTCCTACTCTACCCCTGCCCCCCATCTTAGTCTTTTCTTATACATCCAAGTGTTTTAAAATTTCTGTGGCCCAGGCTGGAGTGCAGTGACATGATCTTGGCTCAATGCAACCTCCACCTCCCAGGTTCAAGCGATCCTCCCACCTCAGCCTCCCAAGTAGTGGGGACTACATGCACATGCCACCATGCCCAGCTAATTTTTGTATTTTTTGTAGAGACGTGATTTCACCATGTTGGCCAGGCTGGACTCGAACTCCTGGGCTCAACTGATCTGCCTGACTCGGCCTCCCAGAGTGCTGGGATTACAGGTCTTTGCTGGGATTATGGGTCTTTTTTTTTTTTTAATTTTAATTTTAATTTTTATTTTTATTTATTTATTTATTTTTTGAGACAGAGTTTCGCTCTTGTTGCCCAGGCTGGAGTGCAATGGCACGATCTCGTTTCACTGCAACTTCTGCCTCCCAGGTTCAAGCGATTCTCCTGCCTCAGCCTCCCTAGTAGCTGAGATTACAGGCATGCGCCACCACACCCAGCTAATTTTGTATTTTTAGTAGAGATGGGGTTTCTCCATGTTGGTCAGGCTGGTCTCGAACTCCCAACCTCAGGTGATCTGCCCGCCTCAGCCTCCCAAAGTGCTGGGATTACAAGCATGAGCCACCGCGCCTGGCCAGGTCTTTTCTTTTATTCCAATTCTCCATATCCATTCTTTATGCCTCCTCCCATGGGCAGCTGATCTAATGTGTTTGAACCTTGAAATTGTGTGATATTCTCTTAAAGCCTGAAGTATTGGTTTATGAGTATGTATTTTTATTATATATTAAACATATTGTACTATGTTTCTCAATTCTGTTCCTTTTTTTTTCACTCATTCCTATGGTCTCTCCATATTTTAGTGTGTTTGTCTGGCTTTGTTCTTCAAATTGCTACATAGTATTTCACAATGTCCCCAGCACCACATCATACTTAACCACTCACCTAGTCATGGAGGCTGATCATTGTGTCCAAGTCCCATCTAATACAAACAATTCTGCAATCAACTTCTACATAAATGTTTCCTTACAGGGTATGAGAATTTCTCAGGGATGTGTAGAGAAGAGAGGATTTGCACCTAATCATGGAGTACCTCATCCAGAATAGGACTGAGTACCACCATATTATTCTCAGATTAGCTGCACTGTACAAGTGTTCTGGCTTCCCCAGTGTTTCTGCTAACAATTAGTAGTACCAGAGTTTCTCATTTTTTGGTCAATAGTGGGTATAAAGGGGTAGCTCTCTGTTTTTTTTTTAACCTCGTGATGCAACAGTAGGGTATCTAATTTTTAATTTGGACATTTCATGATTTACCTGATACCTCTTTGAGCTTCCCTCCTATGAATTACCTTGTTCATAACATTGCCCTGGTTTCAATTGTGCCTCCTCAATTGTCTGTTTCTTACTGATCTGCATCCCATTTATTATTTGCCCCTTTTTCAGCCTTCTCTTCCTCATTTTCCCCATAAGCAAGGTTTCCCTAGGGACCTTTTCTCCTGTTCAGTCTTTTTCTTTTCTTTTTTTGTTTTTTGAGACAGAGTCTCACTCTGCCACCCAGGCTGGAATGCAACGGTGCCATTTCGGCTTACTGCAGCCTATGCCTCCTGGGTTCAAGCGATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGATGTGCACCACCATACTCTGCTAATTCTTGTATATTTAGTAGAGATGGGGTTTTGCCATGTTGGCCAGGCTGGTCTCGATCTCCTGACCTCAAGTGATCTGCCTGCCTCAGCCTCCCAAAGTGCTGGGATTATAGGTGTGACCCACCGCGCCCGGCCAGCTCCATATTTTCTGCTGCCTGAATTGTAATTATTCTATTCCTGATTTTATTTGCTGATTCCATTGTTTTTACTAGTTCATATTAAATGCTAATGACAGATATCTTTACCTAAAACATTCTATTTCTCTTGTCATGAGCATTATGAAACAAACCTACAATTGTTCTCCATTACCTAGTATATGACAATTAAACTCTTCTTTCAAAGAAATAAACAACATGGCCACATATTTCCAGTTCAACTCGTATCTGTATATTTTCTGTAACCTCTGCTCAACTCCATTTTTAATATTTTCTTAATGTTGACCATATCTGATAGTCCTCCCTGAATCTGTTTATTCTGTGCTCTGTCTATTCAGATGAGACATTTTCCACCTTGTGATCAGTTCTCACCTGTCTCACAAAATGGCTTTTAATTATTCTAGTCTGTATGGCTCTTTCCTTTTTCTCATCCTCCATCCCACAAGAATTCTGAGAAAATCACAGGATTTTAGTGTATAGGGTAACTGAGGCTTTTACCTCTATGTTTTTAGAAAGTCTCCGGAATTAAGAGCCTGTTTCAGGCTGAGTGTGGTAGCTCATGTCTGTAAACCCAGAACTTTGGAAGGCCGAGGCGGGAGGATCACTTGAGGCCAGGAGTTCAAGACCAGCCTGGGCAACACAACAAGATTCCATCTCTATTTCAAAAAAATAATTTAAGAAAAAAGAGCCTATTTCTTTTTATAGAAAAATCTATTAATTTGACACATAAGAATTGTATGTATTTATCATGTACAACATGATGTTTTGAAATATGTATACATGAAGAGCCTATTTCTTGTAGTATAACTCAGGGTCTTACCGAGGGAGAAACCACAGACTAATGTGAACAGAGAATGGTTAACATAAAGATTCTTTGCAGCCAGGCGTGGTGGCTCACACCTATAATCCCAGCACTTTGGGAGGACAAGGCAGGTGGATCACCTGAGATCAAGAGTTCAAGACCATCCTGGCCAACATGGTGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCTAGGTGTGGTGGCCCACGCCTGTAATCCAGTTACTCAGGTGGCTGAAGCAGGAGAATCGCTTGAACCCAGGAGGCAGAGGTTGCAGTGAGCCATGGGACTGGAATAATGAGGGATTTGCTAGCAAAAAAAGAAACTCTGAAGAATAAAGGAATAGCAGATAGAAAGCACAGCAGGTTCTTCTAGGGTTGTGAGCAAGCATCCAAGGAAGAGGCTCCCTACTTCCCAGGGATGAAATTCAGACCTTGTAGGGAGGGCACAACCATGGCTCGAGGCAGGTAGAATACTTGCTGTGGTGCTGTGCTGGTGGAACTTGCTGGAAACCTGCCCTCTAGGATTCCAGGGAAAGCTATTGATGCGGAGGTGACTCACTGGAGCTATTCCACTACAAATCGTCTGAGAGTAAACTGGGGGGTGTTGGGTGCTGCTGACTGTACAGCACTGCGGGGGCCTGCAGGAACTAGGTGCTTGGGAAGCCATATGAGCTGCAGGAGCTGGGTGCTGGAGAAGTCACCCACACTGCAGGAGCCGAGCTCTAGAGAAGACCGCGAGACCTGGGTACTGGGGACACTACATGTGCGTCAGGAGCCAGATGTTGGCAAAGATGCCCACACTACATGAGCCTGGTGCTAGACAGCCTGCCCCTGCTGGATGAGCCTGCTGAGTGAGCCCCCTAGAACCAGGAAGCAAACCCTCCTCATCCTGCAGTGTCTCTCTAGCATCTTACACTGACAAAGTTTAATATCGTGCCAGCTGGCAGAAGAAAAAAATATTTAAAGAGATCGAGATCCACTTTTTAAAGTTTTAATTTTTATGGGTACATAGGTATATATATTTATGGGGTACATGGGATATTTGGGAGTTTTGGAGTTTTTTATTTTTGAGACAGAGTCTCGCTGTCACCTAGGCTGGAGTGCAGTGGTGCAATCTTGGCTCACTGCAACCTCCACCTCCCGGATTCAAGCAATTCTCCTGCCTCAGCCTCCCGAGTGGCTGGGATTACAGGTGCATGCCACCATGCCTGGCTAATTTTTGTATTTTTAGTAGAGACAGGGTTTTGCCATGTTGGCCAGGCTGGTCTCTAACTCCTGACCTCAGGTGATCCGCCTGCCTTGGCCTCCCAAAGTGCTGGGATTACAGGCACATGCCAACATGCCCAGCTAAGTTTTGTATCTTTAGTAGAGACGGGATTTTGCCATGTCTCAAACTCCTGGCCTCAAGTGATCCACCCACCTCAGCCTCCCAAAGTGCTAGGATTACAGACATGAGCCACCGCACCCAGCCTGCATGGGATATTTTGATACAGCATACGATGTGTAATAATCACATCAGGGTAACTGGGGCCAGATCCGTTTTTGTTGAGCAGGCAAGGAAGGGTGAATTTGGAACTGAGAGGCAAAACATTGATAACCAGCATACTTATTCTTCAGTTTCCTGAAGTGGAGCATGTAGAAAATATTTAGTAAATGAATTTATTGAATTTGGGGATATAGGCAGAGGAGGAGATTTTTCCTCTTTCAGATGAAATTTTCAAGTGTCTGCTCAGAGGAATTCAAAGGAACATACATTATATTTGGAAAGGGAAGATGACTGCATGAAATGTTAACACTCTCACCCTTTGTGTATTTGTCCTTTCTGTTATAAAACTGTGCCAAACTGAGTATCAATATGAATGGTACAGTGTCTGCTTTACAAATTCATAGCAAACATAAGCTCCCTAGAGGTATACCAAAATTAGAGCTAATATTTAGAAAGACAATACATTTTGGATATGCACAGAGGAACAAAACAAGAGGCTAAATATAGATGTATGTCTTCCCCTACATGATAATTCTGAGGTGAATGGGTCCAGTTCAACAAGTCAACTCTAATCCTGATGGGTCATTCAGGGACCATGTTCTAAGTCACTCCTCTGGCATCTCCTGGGGCATTGTTGTCACCTGCCTGGTTAATGATGGGTCACTGTGTAGTCCAGTGGGAAGAGGGAAGAGGAAATAGAGGACATTTGCCCACTGTCTTAAGGCTGGCCTGCAAGTAGCATATATCACTTCTGCTCATATTCCACTGCTGAGAACATAGCGAGGCCAGTGGATGTAAGGCCCAGCTACATTCTATTCCTGTAAAAGAAGGGGAGAATAGATCTCAGGGGAGGGCCTGCAGATTCTGCCACAGATAGCTTTCCCTTTCCTCTTTTACACGCCTTGTTATAAGCATGTATTCCTGGAACCAATAGAAACTGCAGCTGGGGCCGGCACGGTGGCTCACAGCTGTAATTCCAGCACTTTGGGAGCCCGAGGTGGGCAGATCACTTGAGGTCAGGAGTTCAAGACCAGCCTGGCCAACATGGTGTAACCCCGTCTCTACTAAAAATACAAAAATTAGCTGGGCGTGGTGGTGCATGCCTGTAATCCCAGCTACTCGGGAGGCTGAAGCAGGCGAACCACTTGAACCCGGGAGGCGGAGGTTGCAGTGAGCCGAGATCGCACCACCGCACTCCAGCCTGGGTGACAGAGCAAGACTCCATTTCAAAAAAAAGAAAGAAAGAAAGAAAGAAACTTGCAGCTGGTTATAAAGTTGGAGTGCAAATGTCTATTTACTGTTTGTCTATGTCAGGATGGCATGTTGCAACTAGTTTTCCTATAGATATAAAGGAATTGGTGTTTGAGGCATATAGATTTAATGTTCAAATTAACATTAAATTTGAAGGGCTCCACTCATAATGGTATAGAGGGAAAAGCAAGAAGAAGCAGAGAGCTTAGTAAAGTGGTGGAGCTGATATGTATTAAGAACATAAATTCTGAAATATTTCTTCCATGCCAAGCTTCCCCTCACAGGCTGCAGTTTCTTCTGGTTACTCTACTCACAATCCAGGCCTCTTACATAGTGGAGCTGGACTCCCAGAGTTCAAATCCCATCTCTCCCACTTATTTAGCTATTCGATATTCAGCAAGTTGCATGACTTCTCTGTGCCTCTGTTTTCTAAATTGTAAAACAAATGATAATCGTAGCTACCTCATAGGGTTTAGCTACCTCATAGGGTTAGTTAAATGAGCTGTTTCATGTAAAGCACTTGTAACAGTCTCTGTGCATCATAAATGGTATACAGTTGTTTTGCATTTATTAAGTGTTCTATAAGAATGTTGTGTTGCTACATTATTACTACTATATTGTCCTATGGGCTCTTCCATTTATCTGTGTTCATCCTGTCTGAACTACATGTCCCCTCTAGCCTCTGCTGATTGTTCTTTGTGTCGTTTTCATTTCTTTCATTTTCTTTTTAG
Seq C2 exon
GTGAGGCTATTGGGAAAATGCAGCAACAGGGAATTCCTGGAGGAATTTTCTTCCACTGTGAGAGATTTGATCAACCCATAGGAGAAGATTCATTATGTTCTATTTTAGAAGAACTGTGGCAAGATAATGACCAGCTAGAGCAACGTCAGGAAAACCAGAATAACCTTTTAAGTCATGTGAAAGTATTGATTAAGGAGAGGGGCTATGAACATAAAAACATTGAAAAAATAATTCATGTGACTACCAAGCTTGTTCCTTCAATTAAAAGACTCCATAACTGTGACACAATTTTGAAGCATACTTTAAACTCACATAATCATAATAGAAACAGTGCAACAAAGAACCTTGGCAAGATTTTTGGAAATGGTAACAATTTCCCCCATAGCCCTTCCTCTACTAAGAATGAGAATGCTAAAACAGGAGCAAATTCCTGTGAACATGACCACTATGAAAAACATCTCAGCCACAAACAAGCTCCCACCCACCATCAGAAAATTCATCCTGAGGAGAAGCTTTATGTGTGTACTGAATGTGTAATGGGCTTCACTCAGAAGTCACATCTGTTTGAGCATCAGAGAATTCATGCTGGAGAAAAGTCCCGTGAATGTGACAAAAGCAACAAAGTCTTCCCCCAGAAACCCCAGGTTGATGTACATCCAAGTGTTTATACAGGAGAAAAACCCTATCTGTGTACTCAATGTGGGAAAGTCTTTACCCTCAAATCAAACCTCATTACACATCAAAAAATTCATACCGGGCAGAAACCCTACAAATGCAGTGAATGTGGAAAAGCCTTTTTCCAGAGATCAGACCTCTTTAGACATCTGAGAATTCATACAGGAGAAAAACCTTATGAATGCAGTGAATGTGGAAAAGGCTTCTCCCAGAACTCAGACCTCAGTATACATCAGAAAACTCATACCGGAGAGAAACACTATGAATGCAATGAATGTGGGAAGGCTTTCACAAGAAAATCAGCACTCAGGATGCATCAGAGAATCCACACGGGAGAGAAACCTTATGTATGCGCTGACTGTGGGAAGGCCTTCATCCAGAAATCACATTTCAACACACATCAGAGAATTCATACTGGAGAAAAGCCGTATGAATGCAGTGACTGTGGGAAATCCTTCACTAAGAAGTCACAACTCCATGTGCATCAAAGAATTCACACCGGAGAGAAACCCTATATATGTACAGAATGTGGAAAGGTCTTCACTCACAGGACAAACCTCACCACACATCAGAAAACTCATACTGGGGAAAAACCCTATATGTGTGCTGAATGTGGAAAGGCTTTTACTGACCAGTCAAATCTCATTAAACACCAGAAAACTCACACTGGAGAGAAACCCTATAAGTGCAATGGCTGTGGAAAAGCCTTCATATGGAAGTCGCGCCTCAAAATACATCAGAAATCTCATATTGGAGAGAGACACTATGAATGCAAGGACTGCGGGAAAGCCTTCATCCAGAAATCAACACTAAGCGTGCATCAGAGAATCCATACAGGAGAGAAACCGTACGTTTGTCCTGAATGCGGGAAGGCCTTTATCCAGAAATCGCACTTCATTGCGCATCATAGAATCCATACTGGAGAGAAGCCTTATGAATGCAGCGACTGTGGGAAATGCTTCACTAAGAAGTCACAACTCCGTGTGCATCAGAAAATCCACACAGGTGAGAAGCCCAATATATGTGCTGAATGTGGAAAGGCCTTCACTGACCGATCAAATCTCATAACACATCAGAAAATCCACACTAGGGAGAAACCCTATGAATGTGGTGACTGCGGGAAAACCTTCACCTGGAAGTCACGCCTCAATATACATCAGAAGTCTCATACTGGAGAAAGACACTATGAATGTAGTAAATGTGGGAAAGCTTTCATCCAGAAAGCCACACTAAGTATGCATCAGATAATTCATACAGGAAAGAAACCTTATGCTTGTACAGAATGTCAGAAGGCCTTTACTGACAGATCGAATCTCATTAAACACCAGAAAATGCATAGTGGAGAAAAACGCTATAAAGCCAGTGACTGAGAAAGTCTTCACCTGGAAATCACAACTGGGTATGCATCAGGTATCTAATAGCAGGGAGGAGGAAGGCCTGTTGCTGCAATCATTGTACAGGGGGAAATGGGTATGAGAGACTGAGGCTTGAGTGAACTGAAGGCAAACAGAGCCAAGTATCCTTCAGTCCACTGGAAAGACAAGTTCCTGCATCACCACAGTGTATATGCAATTCTATGCATAGGAAGAGCCTTTAGAGAAAGCATTTGAGCGAAAGTCATGTTTGGTGACATGATTCATACAGACCTCTTGAGCTCCTGGAAATAGTAGAATTAAGACCTGAGGAGATGACTCGTCATCTCTTATGCTTCACTTTTTGGATAAAGAACTTTTTAAATTCAGTACTGATTGGTTCAGCATATCCTGGGACATAAAAATACTCACTACTGGGAAAAACTTTTTCAAATTTCTAGGTTGAGGAGAAGAGTTTTCATTGTCCAAACACTGGCAGGGCACTGACATCAAGGCAGAAAACCTACTTGGGAATGCAGATATCTGTTTTTGTGATCATTGGCACTTAAGACATAGAAAAGATTTCCATGAAAAACTTTTTTCTTTTCCCTTGGGAAGTCCTCATGGTATATATATTTTAAGTGCAATGGAATTTTTAAATTTAAAGATATAACTTTATGAATTGAGAAATTAGGCCTAGCTCTAGGCTATGTTACAGAAATATAGTCATTGAATGATACAGACATATAAAGGTAGTAGTTGTCTCATTATTAATTCCCTGCTGGGAGAGCAGATGAGTCATACCCTATAAGAAGTATGCATGCCTTCTAACCTATGTCCCCAAAGCTGTCATTTGCATAAGCTGCAGGCCATAGATTCCTGATTCCCTCAGTAACTGACCCTACGACAATGGAACTGATCCACGGCACTCTAGATTTTCAGGCTAACCCACCAACACCCCTGCTTTCCTTGGGATTTCCTGAAAAAGAATGGTTGAAAAATTGAGTTTCACTTCCTAATATTTTGTTTTTCTTCCTATTTGGTTAAGGTATATTCATTTCCTACATGCACATTAAGGGTAGTTTTGTGTAGACTGCTATGTGATAAAGTCATGTTGCATTGCAATTAGTTATTCTAAGACATAATTACAGTTTATCATAGTTGAATAACTGGAAGACTTCTCAAGAAAGAGCACTGCTCTTTTTTAACACTGATATATAGACACGTTCTCATTTTCCCTTAAACATTTTTTACAATACTCATAAAAAGGAACTTTCTTTCTAGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000147124-ZNF41:NM_007130:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.333 A=NA C2=0.209
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF0009621=zf-C2H2=WD(100=3.4),PF134651=zf-H2C2_2=WD(100=3.4),PF134651=zf-H2C2_2=WD(100=3.8),PF134651=zf-H2C2_2=WD(100=3.8),PF134651=zf-H2C2_2=WD(100=3.8),PF134651=zf-H2C2_2=WD(100=3.8),PF097235=Zn-ribbon_8=WD(100=6.5),PF134651=zf-H2C2_2=WD(100=3.8),PF134651=zf-H2C2_2=WD(100=3.7),PF134651=zf-H2C2_2=WD(100=3.8),PF134651=zf-H2C2_2=WD(100=3.7),PF134651=zf-H2C2_2=WD(100=3.8),PF097235=Zn-ribbon_8=WD(100=6.3),PF134651=zf-H2C2_2=WD(100=3.8),PF0009621=zf-C2H2=WD(100=3.4),PF134651=zf-H2C2_2=WD(100=3.7),PF134651=zf-H2C2_2=WD(100=3.8),PF134651=zf-H2C2_2=WD(100=3.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)