HsaINT0187143 @ hg38
Intron Retention
Gene
ENSG00000147124 | ZNF41
Description
zinc finger protein 41 [Source:HGNC Symbol;Acc:HGNC:13107]
Coordinates
chrX:47445879-47456016:-
Coord C1 exon
chrX:47455921-47456016
Coord A exon
chrX:47449475-47455920
Coord C2 exon
chrX:47445879-47449474
Length
6446 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
TTCTTTCATTTTCTTTTTAGGTG
3' ss Score
12.05
Exon sequences
Seq C1 exon
GGTACCAAATTCCCAAGTCAGAGGCTGCCTTCAAGTTGGAGCAAGGAGAGGGGCCATGGATGCTGGAGGGGGAAGCCCCACATCAGAGCTGTTCAG
Seq A exon
GTGAGTGAGCATGACCCAGACAGATGGGGACATGGAAGTCAGTATCACTTTCCCTAGGAAAGCCCGATGCCTTTGAAACACTCTGAAGATAACCCATCTTGAAAGTTCTAAACTTTTGGAGTCAATTGGAGATAGTTGACAATAGCCCTCAAATACCTAAATGCCATTTCCATGTATGACCCTTGCCACATTATTGTCTTCTTTGATTGGCCTTTTGGCAAGAGAGCTGTCTCTAGTCTCTGTACTCTGTATCACATACCACCCTGTCTTATCTAGGACCTTTTTATTCTTCCTACTCTACCCCTGCCCCCCATCTTAGTCTTTTCTTATACATCCAAGTGTTTTAAAATTTCTGTGGCCCAGGCTGGAGTGCAGTGACATGATCTTGGCTCAATGCAACCTCCACCTCCCAGGTTCAAGCGATCCTCCCACCTCAGCCTCCCAAGTAGTGGGGACTACATGCACATGCCACCATGCCCAGCTAATTTTTGTATTTTTTGTAGAGACGTGATTTCACCATGTTGGCCAGGCTGGACTCGAACTCCTGGGCTCAACTGATCTGCCTGACTCGGCCTCCCAGAGTGCTGGGATTACAGGTCTTTGCTGGGATTATGGGTCTTTTTTTTTTTTTAATTTTAATTTTAATTTTTATTTTTATTTATTTATTTATTTTTTGAGACAGAGTTTCGCTCTTGTTGCCCAGGCTGGAGTGCAATGGCACGATCTCGTTTCACTGCAACTTCTGCCTCCCAGGTTCAAGCGATTCTCCTGCCTCAGCCTCCCTAGTAGCTGAGATTACAGGCATGCGCCACCACACCCAGCTAATTTTGTATTTTTAGTAGAGATGGGGTTTCTCCATGTTGGTCAGGCTGGTCTCGAACTCCCAACCTCAGGTGATCTGCCCGCCTCAGCCTCCCAAAGTGCTGGGATTACAAGCATGAGCCACCGCGCCTGGCCAGGTCTTTTCTTTTATTCCAATTCTCCATATCCATTCTTTATGCCTCCTCCCATGGGCAGCTGATCTAATGTGTTTGAACCTTGAAATTGTGTGATATTCTCTTAAAGCCTGAAGTATTGGTTTATGAGTATGTATTTTTATTATATATTAAACATATTGTACTATGTTTCTCAATTCTGTTCCTTTTTTTTTCACTCATTCCTATGGTCTCTCCATATTTTAGTGTGTTTGTCTGGCTTTGTTCTTCAAATTGCTACATAGTATTTCACAATGTCCCCAGCACCACATCATACTTAACCACTCACCTAGTCATGGAGGCTGATCATTGTGTCCAAGTCCCATCTAATACAAACAATTCTGCAATCAACTTCTACATAAATGTTTCCTTACAGGGTATGAGAATTTCTCAGGGATGTGTAGAGAAGAGAGGATTTGCACCTAATCATGGAGTACCTCATCCAGAATAGGACTGAGTACCACCATATTATTCTCAGATTAGCTGCACTGTACAAGTGTTCTGGCTTCCCCAGTGTTTCTGCTAACAATTAGTAGTACCAGAGTTTCTCATTTTTTGGTCAATAGTGGGTATAAAGGGGTAGCTCTCTGTTTTTTTTTTAACCTCGTGATGCAACAGTAGGGTATCTAATTTTTAATTTGGACATTTCATGATTTACCTGATACCTCTTTGAGCTTCCCTCCTATGAATTACCTTGTTCATAACATTGCCCTGGTTTCAATTGTGCCTCCTCAATTGTCTGTTTCTTACTGATCTGCATCCCATTTATTATTTGCCCCTTTTTCAGCCTTCTCTTCCTCATTTTCCCCATAAGCAAGGTTTCCCTAGGGACCTTTTCTCCTGTTCAGTCTTTTTCTTTTCTTTTTTTGTTTTTTGAGACAGAGTCTCACTCTGCCACCCAGGCTGGAATGCAACGGTGCCATTTCGGCTTACTGCAGCCTATGCCTCCTGGGTTCAAGCGATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGATGTGCACCACCATACTCTGCTAATTCTTGTATATTTAGTAGAGATGGGGTTTTGCCATGTTGGCCAGGCTGGTCTCGATCTCCTGACCTCAAGTGATCTGCCTGCCTCAGCCTCCCAAAGTGCTGGGATTATAGGTGTGACCCACCGCGCCCGGCCAGCTCCATATTTTCTGCTGCCTGAATTGTAATTATTCTATTCCTGATTTTATTTGCTGATTCCATTGTTTTTACTAGTTCATATTAAATGCTAATGACAGATATCTTTACCTAAAACATTCTATTTCTCTTGTCATGAGCATTATGAAACAAACCTACAATTGTTCTCCATTACCTAGTATATGACAATTAAACTCTTCTTTCAAAGAAATAAACAACATGGCCACATATTTCCAGTTCAACTCGTATCTGTATATTTTCTGTAACCTCTGCTCAACTCCATTTTTAATATTTTCTTAATGTTGACCATATCTGATAGTCCTCCCTGAATCTGTTTATTCTGTGCTCTGTCTATTCAGATGAGACATTTTCCACCTTGTGATCAGTTCTCACCTGTCTCACAAAATGGCTTTTAATTATTCTAGTCTGTATGGCTCTTTCCTTTTTCTCATCCTCCATCCCACAAGAATTCTGAGAAAATCACAGGATTTTAGTGTATAGGGTAACTGAGGCTTTTACCTCTATGTTTTTAGAAAGTCTCCGGAATTAAGAGCCTGTTTCAGGCTGAGTGTGGTAGCTCATGTCTGTAAACCCAGAACTTTGGAAGGCCGAGGCGGGAGGATCACTTGAGGCCAGGAGTTCAAGACCAGCCTGGGCAACACAACAAGATTCCATCTCTATTTCAAAAAAATAATTTAAGAAAAAAGAGCCTATTTCTTTTTATAGAAAAATCTATTAATTTGACACATAAGAATTGTATGTATTTATCATGTACAACATGATGTTTTGAAATATGTATACATGAAGAGCCTATTTCTTGTAGTATAACTCAGGGTCTTACCGAGGGAGAAACCACAGACTAATGTGAACAGAGAATGGTTAACATAAAGATTCTTTGCAGCCAGGCGTGGTGGCTCACACCTATAATCCCAGCACTTTGGGAGGACAAGGCAGGTGGATCACCTGAGATCAAGAGTTCAAGACCATCCTGGCCAACATGGTGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCTAGGTGTGGTGGCCCACGCCTGTAATCCAGTTACTCAGGTGGCTGAAGCAGGAGAATCGCTTGAACCCAGGAGGCAGAGGTTGCAGTGAGCCATGGGACTGGAATAATGAGGGATTTGCTAGCAAAAAAAGAAACTCTGAAGAATAAAGGAATAGCAGATAGAAAGCACAGCAGGTTCTTCTAGGGTTGTGAGCAAGCATCCAAGGAAGAGGCTCCCTACTTCCCAGGGATGAAATTCAGACCTTGTAGGGAGGGCACAACCATGGCTCGAGGCAGGTAGAATACTTGCTGTGGTGCTGTGCTGGTGGAACTTGCTGGAAACCTGCCCTCTAGGATTCCAGGGAAAGCTATTGATGCGGAGGTGACTCACTGGAGCTATTCCACTACAAATCGTCTGAGAGTAAACTGGGGGGTGTTGGGTGCTGCTGACTGTACAGCACTGCGGGGGCCTGCAGGAACTAGGTGCTTGGGAAGCCATATGAGCTGCAGGAGCTGGGTGCTGGAGAAGTCACCCACACTGCAGGAGCCGAGCTCTAGAGAAGACCGCGAGACCTGGGTACTGGGGACACTACATGTGCGTCAGGAGCCAGATGTTGGCAAAGATGCCCACACTACATGAGCCTGGTGCTAGACAGCCTGCCCCTGCTGGATGAGCCTGCTGAGTGAGCCCCCTAGAACCAGGAAGCAAACCCTCCTCATCCTGCAGTGTCTCTCTAGCATCTTACACTGACAAAGTTTAATATCGTGCCAGCTGGCAGAAGAAAAAAATATTTAAAGAGATCGAGATCCACTTTTTAAAGTTTTAATTTTTATGGGTACATAGGTATATATATTTATGGGGTACATGGGATATTTGGGAGTTTTGGAGTTTTTTATTTTTGAGACAGAGTCTCGCTGTCACCTAGGCTGGAGTGCAGTGGTGCAATCTTGGCTCACTGCAACCTCCACCTCCCGGATTCAAGCAATTCTCCTGCCTCAGCCTCCCGAGTGGCTGGGATTACAGGTGCATGCCACCATGCCTGGCTAATTTTTGTATTTTTAGTAGAGACAGGGTTTTGCCATGTTGGCCAGGCTGGTCTCTAACTCCTGACCTCAGGTGATCCGCCTGCCTTGGCCTCCCAAAGTGCTGGGATTACAGGCACATGCCAACATGCCCAGCTAAGTTTTGTATCTTTAGTAGAGACGGGATTTTGCCATGTCTCAAACTCCTGGCCTCAAGTGATCCACCCACCTCAGCCTCCCAAAGTGCTAGGATTACAGACATGAGCCACCGCACCCAGCCTGCATGGGATATTTTGATACAGCATACGATGTGTAATAATCACATCAGGGTAACTGGGGCCAGATCCGTTTTTGTTGAGCAGGCAAGGAAGGGTGAATTTGGAACTGAGAGGCAAAACATTGATAACCAGCATACTTATTCTTCAGTTTCCTGAAGTGGAGCATGTAGAAAATATTTAGTAAATGAATTTATTGAATTTGGGGATATAGGCAGAGGAGGAGATTTTTCCTCTTTCAGATGAAATTTTCAAGTGTCTGCTCAGAGGAATTCAAAGGAACATACATTATATTTGGAAAGGGAAGATGACTGCATGAAATGTTAACACTCTCACCCTTTGTGTATTTGTCCTTTCTGTTATAAAACTGTGCCAAACTGAGTATCAATATGAATGGTACAGTGTCTGCTTTACAAATTCATAGCAAACATAAGCTCCCTAGAGGTATACCAAAATTAGAGCTAATATTTAGAAAGACAATACATTTTGGATATGCACAGAGGAACAAAACAAGAGGCTAAATATAGATGTATGTCTTCCCCTACATGATAATTCTGAGGTGAATGGGTCCAGTTCAACAAGTCAACTCTAATCCTGATGGGTCATTCAGGGACCATGTTCTAAGTCACTCCTCTGGCATCTCCTGGGGCATTGTTGTCACCTGCCTGGTTAATGATGGGTCACTGTGTAGTCCAGTGGGAAGAGGGAAGAGGAAATAGAGGACATTTGCCCACTGTCTTAAGGCTGGCCTGCAAGTAGCATATATCACTTCTGCTCATATTCCACTGCTGAGAACATAGCGAGGCCAGTGGATGTAAGGCCCAGCTACATTCTATTCCTGTAAAAGAAGGGGAGAATAGATCTCAGGGGAGGGCCTGCAGATTCTGCCACAGATAGCTTTCCCTTTCCTCTTTTACACGCCTTGTTATAAGCATGTATTCCTGGAACCAATAGAAACTGCAGCTGGGGCCGGCACGGTGGCTCACAGCTGTAATTCCAGCACTTTGGGAGCCCGAGGTGGGCAGATCACTTGAGGTCAGGAGTTCAAGACCAGCCTGGCCAACATGGTGTAACCCCGTCTCTACTAAAAATACAAAAATTAGCTGGGCGTGGTGGTGCATGCCTGTAATCCCAGCTACTCGGGAGGCTGAAGCAGGCGAACCACTTGAACCCGGGAGGCGGAGGTTGCAGTGAGCCGAGATCGCACCACCGCACTCCAGCCTGGGTGACAGAGCAAGACTCCATTTCAAAAAAAAGAAAGAAAGAAAGAAAGAAACTTGCAGCTGGTTATAAAGTTGGAGTGCAAATGTCTATTTACTGTTTGTCTATGTCAGGATGGCATGTTGCAACTAGTTTTCCTATAGATATAAAGGAATTGGTGTTTGAGGCATATAGATTTAATGTTCAAATTAACATTAAATTTGAAGGGCTCCACTCATAATGGTATAGAGGGAAAAGCAAGAAGAAGCAGAGAGCTTAGTAAAGTGGTGGAGCTGATATGTATTAAGAACATAAATTCTGAAATATTTCTTCCATGCCAAGCTTCCCCTCACAGGCTGCAGTTTCTTCTGGTTACTCTACTCACAATCCAGGCCTCTTACATAGTGGAGCTGGACTCCCAGAGTTCAAATCCCATCTCTCCCACTTATTTAGCTATTCGATATTCAGCAAGTTGCATGACTTCTCTGTGCCTCTGTTTTCTAAATTGTAAAACAAATGATAATCGTAGCTACCTCATAGGGTTTAGCTACCTCATAGGGTTAGTTAAATGAGCTGTTTCATGTAAAGCACTTGTAACAGTCTCTGTGCATCATAAATGGTATACAGTTGTTTTGCATTTATTAAGTGTTCTATAAGAATGTTGTGTTGCTACATTATTACTACTATATTGTCCTATGGGCTCTTCCATTTATCTGTGTTCATCCTGTCTGAACTACATGTCCCCTCTAGCCTCTGCTGATTGTTCTTTGTGTCGTTTTCATTTCTTTCATTTTCTTTTTAG
Seq C2 exon
GTGAGGCTATTGGGAAAATGCAGCAACAGGGAATTCCTGGAGGAATTTTCTTCCACTGTGAGAGATTTGATCAACCCATAGGAGAAGATTCATTATGTTCTATTTTAGAAGAACTGTGGCAAGATAATGACCAGCTAGAGCAACGTCAGGAAAACCAGAATAACCTTTTAAGTCATGTGAAAGTATTGATTAAGGAGAGGGGCTATGAACATAAAAACATTGAAAAAATAATTCATGTGACTACCAAGCTTGTTCCTTCAATTAAAAGACTCCATAACTGTGACACAATTTTGAAGCATACTTTAAACTCACATAATCATAATAGAAACAGTGCAACAAAGAACCTTGGCAAGATTTTTGGAAATGGTAACAATTTCCCCCATAGCCCTTCCTCTACTAAGAATGAGAATGCTAAAACAGGAGCAAATTCCTGTGAACATGACCACTATGAAAAACATCTCAGCCACAAACAAGCTCCCACCCACCATCAGAAAATTCATCCTGAGGAGAAGCTTTATGTGTGTACTGAATGTGTAATGGGCTTCACTCAGAAGTCACATCTGTTTGAGCATCAGAGAATTCATGCTGGAGAAAAGTCCCGTGAATGTGACAAAAGCAACAAAGTCTTCCCCCAGAAACCCCAGGTTGATGTACATCCAAGTGTTTATACAGGAGAAAAACCCTATCTGTGTACTCAATGTGGGAAAGTCTTTACCCTCAAATCAAACCTCATTACACATCAAAAAATTCATACCGGGCAGAAACCCTACAAATGCAGTGAATGTGGAAAAGCCTTTTTCCAGAGATCAGACCTCTTTAGACATCTGAGAATTCATACAGGAGAAAAACCTTATGAATGCAGTGAATGTGGAAAAGGCTTCTCCCAGAACTCAGACCTCAGTATACATCAGAAAACTCATACCGGAGAGAAACACTATGAATGCAATGAATGTGGGAAGGCTTTCACAAGAAAATCAGCACTCAGGATGCATCAGAGAATCCACACGGGAGAGAAACCTTATGTATGCGCTGACTGTGGGAAGGCCTTCATCCAGAAATCACATTTCAACACACATCAGAGAATTCATACTGGAGAAAAGCCGTATGAATGCAGTGACTGTGGGAAATCCTTCACTAAGAAGTCACAACTCCATGTGCATCAAAGAATTCACACCGGAGAGAAACCCTATATATGTACAGAATGTGGAAAGGTCTTCACTCACAGGACAAACCTCACCACACATCAGAAAACTCATACTGGGGAAAAACCCTATATGTGTGCTGAATGTGGAAAGGCTTTTACTGACCAGTCAAATCTCATTAAACACCAGAAAACTCACACTGGAGAGAAACCCTATAAGTGCAATGGCTGTGGAAAAGCCTTCATATGGAAGTCGCGCCTCAAAATACATCAGAAATCTCATATTGGAGAGAGACACTATGAATGCAAGGACTGCGGGAAAGCCTTCATCCAGAAATCAACACTAAGCGTGCATCAGAGAATCCATACAGGAGAGAAACCGTACGTTTGTCCTGAATGCGGGAAGGCCTTTATCCAGAAATCGCACTTCATTGCGCATCATAGAATCCATACTGGAGAGAAGCCTTATGAATGCAGCGACTGTGGGAAATGCTTCACTAAGAAGTCACAACTCCGTGTGCATCAGAAAATCCACACAGGTGAGAAGCCCAATATATGTGCTGAATGTGGAAAGGCCTTCACTGACCGATCAAATCTCATAACACATCAGAAAATCCACACTAGGGAGAAACCCTATGAATGTGGTGACTGCGGGAAAACCTTCACCTGGAAGTCACGCCTCAATATACATCAGAAGTCTCATACTGGAGAAAGACACTATGAATGTAGTAAATGTGGGAAAGCTTTCATCCAGAAAGCCACACTAAGTATGCATCAGATAATTCATACAGGAAAGAAACCTTATGCTTGTACAGAATGTCAGAAGGCCTTTACTGACAGATCGAATCTCATTAAACACCAGAAAATGCATAGTGGAGAAAAACGCTATAAAGCCAGTGACTGAGAAAGTCTTCACCTGGAAATCACAACTGGGTATGCATCAGGTATCTAATAGCAGGGAGGAGGAAGGCCTGTTGCTGCAATCATTGTACAGGGGGAAATGGGTATGAGAGACTGAGGCTTGAGTGAACTGAAGGCAAACAGAGCCAAGTATCCTTCAGTCCACTGGAAAGACAAGTTCCTGCATCACCACAGTGTATATGCAATTCTATGCATAGGAAGAGCCTTTAGAGAAAGCATTTGAGCGAAAGTCATGTTTGGTGACATGATTCATACAGACCTCTTGAGCTCCTGGAAATAGTAGAATTAAGACCTGAGGAGATGACTCGTCATCTCTTATGCTTCACTTTTTGGATAAAGAACTTTTTAAATTCAGTACTGATTGGTTCAGCATATCCTGGGACATAAAAATACTCACTACTGGGAAAAACTTTTTCAAATTTCTAGGTTGAGGAGAAGAGTTTTCATTGTCCAAACACTGGCAGGGCACTGACATCAAGGCAGAAAACCTACTTGGGAATGCAGATATCTGTTTTTGTGATCATTGGCACTTAAGACATAGAAAAGATTTCCATGAAAAACTTTTTTCTTTTCCCTTGGGAAGTCCTCATGGTATATATATTTTAAGTGCAATGGAATTTTTAAATTTAAAGATATAACTTTATGAATTGAGAAATTAGGCCTAGCTCTAGGCTATGTTACAGAAATATAGTCATTGAATGATACAGACATATAAAGGTAGTAGTTGTCTCATTATTAATTCCCTGCTGGGAGAGCAGATGAGTCATACCCTATAAGAAGTATGCATGCCTTCTAACCTATGTCCCCAAAGCTGTCATTTGCATAAGCTGCAGGCCATAGATTCCTGATTCCCTCAGTAACTGACCCTACGACAATGGAACTGATCCACGGCACTCTAGATTTTCAGGCTAACCCACCAACACCCCTGCTTTCCTTGGGATTTCCTGAAAAAGAATGGTTGAAAAATTGAGTTTCACTTCCTAATATTTTGTTTTTCTTCCTATTTGGTTAAGGTATATTCATTTCCTACATGCACATTAAGGGTAGTTTTGTGTAGACTGCTATGTGATAAAGTCATGTTGCATTGCAATTAGTTATTCTAAGACATAATTACAGTTTATCATAGTTGAATAACTGGAAGACTTCTCAAGAAAGAGCACTGCTCTTTTTTAACACTGATATATAGACACGTTCTCATTTTCCCTTAAACATTTTTTACAATACTCATAAAAAGGAACTTTCTTTCTAGCATGCAATTGTATTTTTATTTTATTTTAAAATCTTTTTATTAAACTATAATGTATACAGAAAATGCATATATCATAAACATACAGCTCAGTGCATTCTCAAAAACTGAACATACTCAGATCAAGAAACAGAACATGACCAGCACCCCAGAAGCCTTCCCCACTTTCCCTTCCAGGCAAGCCCCCAAGGGTATACATTATCCTGGCTTCTCACAGCATAGATTCATTTTGCCTGTTTTGTATTTTATATAAATTGAGTCAATTATATATCATATAATTGAGCCATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000147124:ENST00000313116:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.374 A=NA C2=0.210
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF0009621=zf-C2H2=WD(100=3.4),PF134651=zf-H2C2_2=WD(100=3.8),PF134651=zf-H2C2_2=WD(100=3.8),PF134651=zf-H2C2_2=WD(100=3.8),PF134651=zf-H2C2_2=WD(100=3.8),PF134651=zf-H2C2_2=WD(100=3.8),PF134651=zf-H2C2_2=WD(100=3.7),PF134651=zf-H2C2_2=WD(100=3.8),PF134651=zf-H2C2_2=WD(100=3.7),PF134651=zf-H2C2_2=WD(100=3.8),PF097235=Zn-ribbon_8=WD(100=6.3),PF134651=zf-H2C2_2=WD(100=3.8),PF0009621=zf-C2H2=WD(100=3.4),PF134651=zf-H2C2_2=WD(100=3.7),PF134651=zf-H2C2_2=WD(100=3.8),PF134651=zf-H2C2_2=WD(100=3.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains