HsaINT0187167 @ hg19
Intron Retention
Gene
ENSG00000170954 | ZNF415
Description
zinc finger protein 415 [Source:HGNC Symbol;Acc:20636]
Coordinates
chr19:53618957-53619686:-
Coord C1 exon
chr19:53619566-53619686
Coord A exon
chr19:53619065-53619565
Coord C2 exon
chr19:53618957-53619064
Length
501 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGG
5' ss Score
6.74
3' ss Seq
GAAATTCTCTTCCTGACCAGAGT
3' ss Score
5.06
Exon sequences
Seq C1 exon
TTGACATTCAGGGACGTGGCCATCGAATTCTCTCAAGATGAGTGGAAATGCCTGAACTCTACACAGAGGACTTTATACAGGGATGTGATGTTGGAGAACTACAGGAACCTGGTCTCCCTGG
Seq A exon
GTGAGGATAATTTTCTTCCAGAAGTCAAAATCTGCCCTTGGTATCTTTCCATTTTCCCTTGTGTGCCTCTTGGGAGCCCCTGCATTACCTGACTGAGTTTGAGGCCTTGTTGACTCTGAAATGAAAAGCTCCATAATGTGAACTCTGGAGTTTAACCATCCCCTTTTTCCAGATTTTCTGACCCCTTCATGATACAACAGTGGTGGTTCCAGAGCTGAAGTATCCATGAAAGCTTATGGTAGACTTCTGAAATACTCACTTCTTGTTTTCTGCCCCTGTGCTTTGATTCAGTAGTTCTTGGAAGGGAGCTAGATATTTGCATATTACAGTCTTCCCTAAGCATTCAGAGTTGGCATTCAGTGAAATAATTTGTGAAATATTTTCCTAGATCCATCTGTGATAGCCTCTCTTCTTATCCAAGCAAAGGGCTGAGATTCTTGAAAAGCCACAGCACATCATGTTCCATTCATTTTATAAGCGGGAAATTCTCTTCCTGACCAG
Seq C2 exon
AGTATTATCCTATGTGGGAGCACAGGAAAGAGCCCTGGACCATAGAAAGCCAAGTACGAGTAGCAAGAAAACCAAAAGGGTGGGAATGGATCAAAGGTGTGAAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000170954-ZNF415:NR_028343:4
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.013 A=NA C2=0.386
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=100.0)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGACATTCAGGGACGTGGC
R:
TCACACCTTTGATCCATTCCCAC
Band lengths:
223-724
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)