HsaINT0187200 @ hg19
Intron Retention
Gene
ENSG00000130818 | ZNF426
Description
zinc finger protein 426 [Source:HGNC Symbol;Acc:20725]
Coordinates
chr19:9648935-9649303:-
Coord C1 exon
chr19:9649251-9649303
Coord A exon
chr19:9649022-9649250
Coord C2 exon
chr19:9648935-9649021
Length
229 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
3' ss Seq
TGTGAATTTTTTTCCGGCAGGAA
3' ss Score
8.68
Exon sequences
Seq C1 exon
GTGAGCGCCTGAGAGTCTTTTTGCCTTTCAGAGTTAAGGCCTCACTGGCCTGG
Seq A exon
GTGAGTTCCGAGGAGATGAACTGGTTTTGGGGTGAAGGACGGGTTTGGCCCGGACGTTAGAGAGGCCTGGCCCGCTCTGCTCGTGTCTGCTGGGCCCGCTAGCGTCCGCTCGGACCGTCGCTCCTCGGGAGGAGTCGGGTTTATAGTTACGGTGTCCGCAGGGTGTTTTCATCTGTGCGCCCCTCTCCAAAGGCCTCCAAAGCAGCGTTTGTGAATTTTTTTCCGGCAG
Seq C2 exon
GAAAATAATTGCTGCCTTTTGCATCCGCGTTGGCTCCGTCCCCAGGATCTTCCCGGTTCAGGGACCTGGCGATTTCTGAGTGTTCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000130818-ZNF426:NM_024106:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAGCGCCTGAGAGTCTTTT
R:
CGGAACACTCAGAAATCGCCA
Band lengths:
140-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)