HsaINT0187200 @ hg38
Intron Retention
Gene
ENSG00000130818 | ZNF426
Description
zinc finger protein 426 [Source:HGNC Symbol;Acc:HGNC:20725]
Coordinates
chr19:9538259-9538627:-
Coord C1 exon
chr19:9538575-9538627
Coord A exon
chr19:9538346-9538574
Coord C2 exon
chr19:9538259-9538345
Length
229 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
3' ss Seq
TGTGAATTTTTTTCCGGCAGGAA
3' ss Score
8.68
Exon sequences
Seq C1 exon
GTGAGCGCCTGAGAGTCTTTTTGCCTTTCAGAGTTAAGGCCTCACTGGCCTGG
Seq A exon
GTGAGTTCCGAGGAGATGAACTGGTTTTGGGGTGAAGGACGGGTTTGGCCCGGACGTTAGAGAGGCCTGGCCCGCTCTGCTCGTGTCTGCTGGGCCCGCTAGCGTCCGCTCGGACCGTCGCTCCTCGGGAGGAGTCGGGTTTATAGTTACGGTGTCCGCAGGGTGTTTTCATCTGTGCGCCCCTCTCCAAAGGCCTCCAAAGCAGCGTTTGTGAATTTTTTTCCGGCAG
Seq C2 exon
GAAAATAATTGCTGCCTTTTGCATCCGCGTTGGCTCCGTCCCCAGGATCTTCCCGGTTCAGGGACCTGGCGATTTCTGAGTGTTCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000130818:ENST00000253115:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAGCGCCTGAGAGTCTTTT
R:
CGGAACACTCAGAAATCGCCA
Band lengths:
140-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains