HsaINT0187279 @ hg19
Intron Retention
Gene
ENSG00000185219 | ZNF445
Description
zinc finger protein 445 [Source:HGNC Symbol;Acc:21018]
Coordinates
chr3:44492806-44497188:-
Coord C1 exon
chr3:44496613-44497188
Coord A exon
chr3:44492975-44496612
Coord C2 exon
chr3:44492806-44492974
Length
3638 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
3' ss Seq
CAACATTTTCTTCTTGCCAGGAC
3' ss Score
7.61
Exon sequences
Seq C1 exon
AAATGCTGGTAATTTCAGTCACTTGCTGATGACTTCTGATGTCCCAGCAAATGTTGGCATTGTTGACTGCTGAGAAGATACTTCTGAGGACCCACGTCTAAGGTGGACTTGGTTCGCACTCTTCTGGTTAGTCCCTGAACAGGAGTGATGCCTCCAGGCAGGTGGCATGCTGCCTATCCAGCTCAGGCCCAGTCTTCGAGGGAGCGAGGGCGGCTTCAGACAGTAAAGAAGGAAGAAGAGGATGAAAGCTATACTCCAGTGCAGGCTGCCAGGCCACAGACTCTCAACCGCCCTGGCCAGGAGCTGTTCCGCCAGCTCTTCAGACAGCTTCGCTACCATGAGTCTTCAGGGCCCCTAGAAACTCTGAGCCGGCTCCGGGAACTCTGTCGCTGGTGGCTGAGGCCTGACGTTCTCTCCAAGGCACAGATCCTAGAGCTGCTGGTGCTGGAACAGTTCCTGAGCATCCTGCCTGGGGAGCTCCGGGTTTGGGTGCAGCTTCATAACCCTGAGAGTGGCGAGGAGGCTGTGGCCTTGCTGGAGGAGCTGCAGAGGGACCTTGATGGGACATCCTGGAGG
Seq A exon
GTGAGTGTGAGCAAGTGTGTGGTGCCCAGGGAACTCTGCCTGCTAGTGAGCCAGCTTGTCTGGGGATGGGGGTGGCCCTCTAAACTGTCAATATAGAGGAGTGCAGGGGAAGCCTTCCTTTCTTCCCATGGTACCTGAGCAGCTGAGAACGGGACCCTGAGCCACGGACCCTTTAGCAGGTATCCTTTCCTACCTTCCCAGAGGAATATCAGCTCCAGATAGGGTCAGCAAGTCTCCATAAATAACAGCAACTTCTGGGCACAGTGGCTCACACATGTAATCCCAGCACTTTAGGAGGCTGAGGTGGGAGGATTGCTTGAGGCCAGGAGTTCAAGCCAGCCTGGACAACATAGGAGGACCCCCCCACACTGTCTCTATACATAATTTAAAAATTAGGCCAGGCATAGTGGCTCACACCTGTAATCTAAGCACTTTAGAGTCCAAGGTGGGCGGATTGCTTGAGTGCAGGAATTCGTGACCAGCCTGGGCAACATGGCAAAACCCTGTTTCTACAAAAATTAGCTGAATGTGGTAGCATGTGACTGTAGTCCCAGCTACTTGGGGGACTGAGGTGGGAGGATCACTTGAACCCAGGTTAGGTCAAGGCTGCAGTGAGCCGTGATTGCACCACTGCGCTCCAGCCTGGGTGACACAGCAAGACCCTATCTCTAAACAAAAAAGCCCAGTAACTAGTCTTTGGACACAGTGGCTTACAGTATACAAAGTCCATCTCCACATATTATCTAATTTGACTTGAGACTAACCATAGCCCTGTAAAGTGGTGGGTGTTGGGACAGCATTTAGGGTTAGGGCTCTTGGCTTCTCAGTGGGAGAGTACATGTTAAAACTCAGAAGAGCGCTCTGCAGGCACCATGTAGCTTCCTTCTCAGTAAGCTTTTTTTTTTCTTTTCTTTTCTTTTTTTTTTTGAGGCATACCCCACCACTCCCAGCTAATTTTGTTTGTATTTTTAGTAGAGATGAGGTTTTACCATTTTGGCCAGGCTGGTCTCAAACTCCTGACCTCAGGTGATCCATCCGCCTTGGCCTCCCAAAATGCTGGGATTACAGGTATGAACCACTGTGCCCAGCCCTTCTCACTAAGCTTTTGAGGACCTTTTCTATGTGTGTGAGATGGGAGGCAGGGAAGATGGTCATGAGTGCTGAGGGGCAGAGCTGGGCTGAGAAATAGGAAGACCTCGATTTTAGACTTCATTCCACAACCTCAACATCTGTGGCCACATAGTTGTACCTTTCAGAGCCTCTGTTCGTTGAGAAGAAAATGCAGAAATGGTTTAATCGTGAGAATTTGTTCGGTAAATATTCAAGTGCTTATCATGTGCCTGGCCCTGGCAGAGTTGGCAGTCCCAGGCCTGGCAGGAGAGCAGCAGCTGGTCAGTTCAAGTGCGTTCGTTCTTCCTGCCCTTCTCCTGCACACAGGGGAGCTGATGCTTCCTGTATTGTTACAGTTTTTTAAAAAAGCATTTATCACTTTTTTAAGGCTTCTTTATATAAAAATACATGATTCTGGCCAGGCGTGGTGGCTCACTCCTGTAGTGCTAGCACTTTGGGAGGCCAAGGCGGGCAGATCAGTTGAGGTCAGGAGTTCGAGACTAGCCTGGCCAACATGGTGAAACTCCATTTCTACTAAAAGGGCAGAAATTAGCCGGGTGTGGTGGTGTGCACCTGTAGACCCAGCTACTCAGGAGGCTGAGGCAGGAGAATTGCTTGAACCTGGAAGGTGGAGGCTGCAGTGAGCTGAGATTTCACCAGTGCAGTCTAGACTGGGCAACAGAACAAGACGCTGTCTAAAAAAAAAATTAAAAAAAAAAAACATATATAGACATACACTTTCATACATATACATATATATATGATTCTGCACACATAATTCATGTATAAATGAAAGTTGTAGCTTGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGTGGCAGATCACAAGGTCAAGAGATCGAGACCATCCAGGCCAACATGATGAAAACCCATCTCTACTAAAAATACAAAAATTAGCTGGGCGTGGTGGTGTTCGCCTGTAGTCTCAGCTACTTGGGAGGCTGAGGCAGGAGAATTGCTTGAACCCAGGAGGTGGAGGTTTCAGTGAGCCGAGATCACGCCACTGCACACCATCCTGGCGAAAGAGCAAGACTATGTCCGAAAAAAAAAAAAAAAAGATTTCTGAAACAAATTTGACATACTTGTCCCTAAAACTTTATTATAAAAATTAAATCAAGTAAGACATCAGGACATGGTCTACCAGCAGTAAATGGTAATAAATAGACACAGGGTATAACTAATAGAAAATATTTTTGCACAACATGGGGTACTATTTTAAAAAATTTAAAAGAGCATTTGTTATTTTTACCAAAACAATGAAATGTTCAAAAGGACCTGATAATAATTTATAAAAGGAAATGAGGTACACAGTAGTTACAAAATCATGGCTTGGTTATATTCAGCTCATTTACAGCTAGATGTAATTTTAAAAATCCATGAAAACATTGCCACATGAGCAGAAAGGGCCTACCTGGTTGAAAGCTACTTAAAAGACAGTGGGGGCTGGGAGAAGCCCCTCAAATTTGGAAAATGAAGAGAAATGCTTTAAGATATATGTAAAGTCACAGAATCGTTCTGTGGTTCAGCAAAATTATCACAGTGTGAAAAACCAGGGCCCGAGAAAGTTTGTCCTTAAACTTGTTTTGCTGTGCTTCCATATTCTTTTTTTTTTTTTTAATTCTTCCTTTATTAGAAGAATAAAAAACGGGAGATAAATTATTGTGGTCAGTTCATCATCTTTAGTGTGTATCTCTGTATCAGATGATTAATGGCCTCAGGCTGAGATTTGTCCATATTGGTATAAAGACTGTCTCGGCCACAGGACCAGAAAATCTCAAATTGTAGTTTCCTGTACTCATCTCTATGTGAGGGACAGCCTTGCCTCAGAGACCAGAGTTATTTGAAGTCTTAGGGCAAATGCTTCCTCTTTGTTGGTCTCTACTTAGATGGACACTGCCATTTTTTACACTGGAGACTTTCTTCTATGGTTCCATGGCTGACTCTCATGATTAGCATTGCCTCTCTATCAGTGTTATTATTAAAAACAAGTTTACAATTTGGGAGCTAGCCTGCCTCTTTGAGTTCACTTTGTACATCAGTGCCTAGAGCAGCACTTGACAGTAGATATTACTTGACTGTATCTCCACTGTGAACCATTATGAGTTTAATTCTCAGGAACTAGTTCCTTCTCTCTCATTTCTAAGTTACAGGCCTGGGGTGGGAGCTGAGGGGTAGTGGGAAGGTGGCACTGTGTCATCTGAGGCCTGACAAGAGTGCTGTACTGAGTTACCATGTGCTTCCTTGTGTTGAGCTGGAGTCTGTCTCTACCTGGACTCTCCCATGACCCTCATTAGAGCCCAAGGAGGCTGAGGTGGTTGGAGGTACCTCCCTGGGCGTTCTTCTTGCCCTTTCCTCCTGCCTGGAAGTAATAAAGGACCTGGCTTACCTATCCCTCGGCCTTTGTCCTTCAGAGATTGGTCATGTGGTCTCTTCTCTGAGTTTGCTTTCTGATTCCCAGAAAGATCCTCTCACAACATTTTCTTCTTGCCAG
Seq C2 exon
GACCCGGGCCCTGCCCAGAGCCCAGATGTGCATTGGATGGGTACAGGAGCCCTGCGATCTGCACAGATATGGTCCCTTGCTTCACCTCTCAGGAGCAGCTCTGCTCTGGGGGACCACCTGGAGCCTCCCTATGAAATAGAAGCACGTGACTTCCTGGCTGGGCAATCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000185219-ZNF445:NM_181489:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.315 A=NA C2=0.231
Domain overlap (PFAM):
C1:
PF0202312=SCAN=PU(97.9=65.7)
A:
NA
C2:
PF0202312=SCAN=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)