BtaINT0165503 @ bosTau6
Intron Retention
Gene
ENSBTAG00000046301 | ZNF445
Description
zinc finger protein 445 [Source:HGNC Symbol;Acc:HGNC:21018]
Coordinates
chr22:16373726-16376583:-
Coord C1 exon
chr22:16376155-16376583
Coord A exon
chr22:16373895-16376154
Coord C2 exon
chr22:16373726-16373894
Length
2260 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
3' ss Seq
CAACATTTTCTTCTTGCCAGGAC
3' ss Score
7.61
Exon sequences
Seq C1 exon
ATGCCTCCAGGCAGGTGGTACGCTGTCCATCCAGCTCAGGCCAAAGCTTCCAGGGAGCGAGGACGCCTTCAGATGGTAAAGAAGGAAGAAGAGGATGAAAGCTACACTTCAGTGCCGGCTGCCAGACCACAGACACTCAACCGTCCTGGCCAGGAGCTGTTCCGCCAGCTCTTCAGGCAGCTTCGCTACCACGAGTCTTCTGGGCCTCTGGAGACCCTGAGCCGGCTCCGGGAGCTATGCCGCTGGTGGCTGAGGCCAGATGTTCTCTCAAAGGCCCAGATCCTCGAGCTGCTGGTGCTGGAGCAGTTTCTGAGCATCCTGCCAGAGGAGCTCCGGACCTGGGTGCAGCTGCATCACCCTGAGAGTGGTGGGGAGGCTGTGGCCTTGCTGGAAGAGCTTCAGAGGGACTTTGATGAGACACCGTGGAGG
Seq A exon
GTGAGTGTGAGACAGTGTGCGGCGCCCAGTGAACTCTGCCAGTGAGTCCAATTGTGGGGGGAGGGGCTGGACTTCTGAACCCTCACCACGGAGGAGTTCACGGGAAGCCTTCCCTGCTCATTCCATGGCACCGGAACAGAAAAGAACTGGACCCACAGCCAAGGACCGTTTAGCAGGCAGCTCCTTCCTCCTTCGCAGGGGAATATAAGCTCCAGGAAGAAGAGGGTCTGCAAGTATCCAAAATAACAGTAATGAGGTTTTGGACACGTTGACTTACACAAAGTGTATCTCCACATACCTAACTTGACTTGCTACCCATGTGTAAAGTGGAGGTTATCTCTTGCTCAGAAGTAGGAAAGTTAGTGTCAGGATCCTTGGTTTCTAAATACATATTGATGAGACCTAGAAGAGCAGTATACATGTGTCATCTTATCTCTTTCTCAGTAAACTTTTGAAGATTTGTTCTGTGCGGGGGAGATGGGATAGATGAATGGTGAGGGGCAGCCTGGGGCTAGGAGTATCCTTGAGTGCCTGCCATGGGCCCGTCCTGCGCTTGGTGCTGGGGGACAGAGCTGACAGTCCCGGGGCTGGCGGCGGAGCAGCGGATCAGTTCAAGTGCACCCATGAGCTCCTCTGCCCCACACAGGCCCGCCTCTCGGTGCTTCTCCTACCTTTGAGGTTTTTGTGTTTAAGGAGTATTTTATCATTTTTGTAGGCTTTTAAAAATTTTTATATAATGTGTGTAATTCTTCATATATGATTCATTCATGCATAAATGAAGGTTATGTTTAAGATTTATGAAACAAAAGTTTAAGACACTTTTCCCCTAAAAGTAAAATAAAAATTGGATCAATAAATCCTCTGAATGTGGTCTCTGACATGGTCTACCAGCAGTATATGGTAACAGATGTTAAAAGAGAAAACCTCTTTGCTCAGTATTGGGTACTATTTTTTTTTTTTTTTTTTTGGGTACTATTTTTTAAAATCTGAAAGAACATTTATAATTTTTACCAAAAACAATGAGATGTTCAAAATGACCTAAAGATAACTTTTAAAGCAAATAAGGTACACAGTAGGTACAAAATTGTGGCTCGAGTATATTCAAATCAGGTAGGACAAAGTGTGTGGTTTAAAAATCGATGAAAACATAGTCAAATGAGCAGAAAGGGGTTATCTGGTTGAAAGTTAGTTAGGAATTTGAAAACAGAAAACAGGCTGGTAAAAAGCCTACCAAATTCTAAAAAATGAGCAGAAATAGTCAAGATGCATATGAAATTACAGAATCCCCTTATAGTTTATCCGACTTACCAAAACGTGAGAAACTGGTGCCCGAGAGTTTGTCCTTAAAGTCATTTGTGCTGTTCTTGCTTTATTTTCCCTTTGGTGGGATTTGGGAGGAATAGGAGATAAATTGCTGTGATGGCTGTATCCTCTTCAGGCTCTAGCTGTGTCTTAGATATTTAATGGCCTCAGGTTAAGATCCATCCAAATCAGTACAGAGAATGTTTTGGCCACAGGACCAGAAAAACCTAAAGTTCATTGACTGCAGCTTCCTATGCTCACTTCTGTGTCAGGAGTAGCCTTACTTCCAGAGACCAGGACTTTTGAAGTCCCAGCACAAAGGCTGCGTCTCCAGGTCTCGGCTTGTGTGGGCACTGCCCATTTTTTTTGCTCCTGAGACCTTTTCTTGTGTGCGTCTATAGCTGGCACTCACAGTTAGCATTGCTGCTCCAGTGGTATTATTCTTTCACTCAGGTTTACAGTCTGGGAGTCTTGCTGCCTTTTTGAGGTCACTTGGCATAGTATTACCTAGAGCAGTGTCTGACACTTGGTAGATATTATCCGGCTGCATCTCTGCTGTCAACCATTATCAGTTTACCTCTCAGGGAGGAATCTCTTCTCTCATTTCTAAGTTCCAGGCCAGGGGTGGGGCTGAGGGCTAGGGGGCAGGTATCACTGTAGCACCCAAGGTTGGAACAGCAGTACTGTCACTGACCAACCAGGCGCTTTCCTGTGTCGAGTGAGAATCCGGCTCTACCTGTCTCTGCATGGCCCTTATTAGAGCCCAGGGAGGTGGAGGGGTGAGGGGGATCCTTCCTGGGCTTTCTGGTCCTCCTTTCTGTTCTGCCTGTAGGTAATAAAGGGCCCAGCTCACCGTTTCCTGGGCCTCTGCCTTTTAGAGATCAGCCGGGTGGCCTGTTCTCTGCGTGTGCTTTCTGATTCCTACAGGGATCCTCTCACAACATTTTCTTCTTGCCAG
Seq C2 exon
GACCCAGCCCCTGCCCAGAGCCCAGATGTGCATTGGATGGGCACAGGAGCCCTGCGAGCCGCACAGATATGGCCCCCTGCTTCACCTCTCAGGAGCGGCTCGGCTCTGGGGGACCACCTGCAGCCTCCCTATGAAATAGGAGTGCGTGACTTCCTGGCTGGGCAACCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000046301:ENSBTAT00000065626:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.259 A=NA C2=0.263
Domain overlap (PFAM):
C1:
PF0202312=SCAN=PU(97.9=65.7)
A:
NA
C2:
PF0202312=SCAN=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]