BtaEX0041323 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000046301 | ZNF445
Description
zinc finger protein 445 [Source:HGNC Symbol;Acc:HGNC:21018]
Coordinates
chr22:16373325-16376583:-
Coord C1 exon
chr22:16376155-16376583
Coord A exon
chr22:16373726-16373894
Coord C2 exon
chr22:16373325-16373383
Length
169 bp
Sequences
Splice sites
3' ss Seq
CAACATTTTCTTCTTGCCAGGAC
3' ss Score
7.61
5' ss Seq
CCGGTACTT
5' ss Score
5.68
Exon sequences
Seq C1 exon
ATGCCTCCAGGCAGGTGGTACGCTGTCCATCCAGCTCAGGCCAAAGCTTCCAGGGAGCGAGGACGCCTTCAGATGGTAAAGAAGGAAGAAGAGGATGAAAGCTACACTTCAGTGCCGGCTGCCAGACCACAGACACTCAACCGTCCTGGCCAGGAGCTGTTCCGCCAGCTCTTCAGGCAGCTTCGCTACCACGAGTCTTCTGGGCCTCTGGAGACCCTGAGCCGGCTCCGGGAGCTATGCCGCTGGTGGCTGAGGCCAGATGTTCTCTCAAAGGCCCAGATCCTCGAGCTGCTGGTGCTGGAGCAGTTTCTGAGCATCCTGCCAGAGGAGCTCCGGACCTGGGTGCAGCTGCATCACCCTGAGAGTGGTGGGGAGGCTGTGGCCTTGCTGGAAGAGCTTCAGAGGGACTTTGATGAGACACCGTGGAGG
Seq A exon
GACCCAGCCCCTGCCCAGAGCCCAGATGTGCATTGGATGGGCACAGGAGCCCTGCGAGCCGCACAGATATGGCCCCCTGCTTCACCTCTCAGGAGCGGCTCGGCTCTGGGGGACCACCTGCAGCCTCCCTATGAAATAGGAGTGCGTGACTTCCTGGCTGGGCAACCCG
Seq C2 exon
ATCCTCCTGCTGCACAGGTGCCTGCCCTTTGCTCGAAGGAGGGATGCGCAGACAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000046301_MULTIEX1-2/2=1-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.259 A=0.263 C2=0.600
Domain overlap (PFAM):
C1:
PF0202312=SCAN=PU(97.9=65.7)
A:
PF0202312=SCAN=PD(0.1=0.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCTATGCCGCTGGTGG
R:
CATCCCTCCTTCGAGCAAAGG
Band lengths:
244-413
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development