RnoEX0101396 @ rn6
Exon Skipping
Gene
ENSRNOG00000025554 | Zfp445
Description
zinc finger protein 445 [Source:RGD Symbol;Acc:1559144]
Coordinates
chr8:131892480-131904461:-
Coord C1 exon
chr8:131904226-131904461
Coord A exon
chr8:131892869-131893013
Coord C2 exon
chr8:131892480-131892538
Length
145 bp
Sequences
Splice sites
3' ss Seq
TGACATTTTCTTCTTGCCAGGAC
3' ss Score
8.91
5' ss Seq
GAGGTGGTA
5' ss Score
-1.91
Exon sequences
Seq C1 exon
ATCGAATGGATCTGTCGTCAAGTTGTGTTCTGTGGGGTCACACACCTAGGCTAAGACCTTGGAGGTTTAACACCTGGGAGGAGTTTGGGTAGAGAGCAGCCGAGATGGCATTCCTCCGGGTTTCCTAGACGAACAGCAGAAGTGTACTTCCGCTCTCCTAGAGAGGCCCGCGGAGGAAGTGGGCCCAGCGAGCTAACAGTCATCAGGAGGAGCGCGGAGTTCTCCGCTGAGAGTAG
Seq A exon
GACTCATGCCTTACTCAGAACCCAGATGTGCATTGGATAGGCACTGGACCTCTGCAAGCTGCACAGATATGGTCCCCTGCGTCACATGTGGGGAAGAGCTCTGCTCTAGAAGACTACTTGGAGACTCCACATGGAATAGGACGAG
Seq C2 exon
ATTCTCCTGCTGTCTCGATGCCTGACTATTTCCAGATAGAAGAGAGCATAGAACACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025554_MULTIEX1-2/2=C1-C2
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.080 C2=0.050
Domain overlap (PFAM):
C1:
NA
A:
PF0202312=SCAN=PD(0.1=0.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTTGTGTTCTGTGGGGTCAC
R:
TAGTCAGGCATCGAGACAGCA
Band lengths:
244-389
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]