MmuEX6070026 @ mm9
Exon Skipping
Gene
ENSMUSG00000047036 | Zfp445
Description
zinc finger protein 445 [Source:MGI Symbol;Acc:MGI:2143340]
Coordinates
chr9:122766221-122771246:-
Coord C1 exon
chr9:122770827-122771246
Coord A exon
chr9:122766588-122766756
Coord C2 exon
chr9:122766221-122766279
Length
169 bp
Sequences
Splice sites
3' ss Seq
TAACATTTTCTTCTTGCCAGGAT
3' ss Score
8.16
5' ss Seq
CTGGTGACT
5' ss Score
3.06
Exon sequences
Seq C1 exon
ATGCCTCCAGGCAGGTGGCATGCTGCCCGCTCAGCTCAGGTGTCAAGGGAACAAGGCTGCCTTCGAATGGTAAAAGAAGAGGAGGAGGATGGCTATATTTCAATGCAGACTGCCAGGCCACAGACACTTAACCGCCCTGGCCAGGAGCTATTCCGTCAGCTCTTTAGACAGCTTCGCTATCATGAATCTTCTGGGCCCCTAGAAACTCTGAGCCGGCTCCAGGAGCTCTGCCGCTGGTGGATGAGGCCTGATGTTCTTTCAAAAGCACAGATGTTAGAGTTGTTGGTCTTGGAGCAATTCCTGAGCATCTTGCCTGGAGAGCTCCGGACATGGGTCCAACTCCATTGCCCTGAGAGTGGTGCAGAGGTTGTGGCCCTGCTGGAAGAGCTGCAGAGGGATCTTGATGGAACCCCACTGAAG
Seq A exon
GATCCATGTCTTACTCAGAATCCAGATGTGCATTGGATAGGCACTAGTGCTCTGCAGCCCGCACAGATATGGTCCCCTGCATCACATCTCAAGAACAGTTCTGCTCTAGAGGACCACTTGGAGACTTCACATGGAATAGGAATTTGTGACGTCCTGGCTGAACAAACTG
Seq C2 exon
ATTCTCCTGCTGTCTCGGTGCCTGACTATTTCCAGTTAGAAGAGGGCATAGAATACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000047036-'0-2,'0-1,1-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.121 A=0.035 C2=0.000
Domain overlap (PFAM):
C1:
PF0202312=SCAN=WD(100=67.9)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGCCCCTAGAAACTCTGAG
R:
ATAGTCAGGCACCGAGACAGC
Band lengths:
258-427
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: