HsaEX0073709 @ hg19
Exon Skipping
Gene
ENSG00000185219 | ZNF445
Description
zinc finger protein 445 [Source:HGNC Symbol;Acc:21018]
Coordinates
chr3:44492360-44497226:-
Coord C1 exon
chr3:44496613-44497226
Coord A exon
chr3:44492806-44492974
Coord C2 exon
chr3:44492360-44492454
Length
169 bp
Sequences
Splice sites
3' ss Seq
CAACATTTTCTTCTTGCCAGGAC
3' ss Score
7.61
5' ss Seq
CCGGTACTT
5' ss Score
5.68
Exon sequences
Seq C1 exon
GATACTTCTGAGGACCCACGTCTAAGGTGGACTTGGTTCGCACTCTTCTGGTTAGTCCCTGAACAGGAGTGATGCCTCCAGGCAGGTGGCATGCTGCCTATCCAGCTCAGGCCCAGTCTTCGAGGGAGCGAGGGCGGCTTCAGACAGTAAAGAAGGAAGAAGAGGATGAAAGCTATACTCCAGTGCAGGCTGCCAGGCCACAGACTCTCAACCGCCCTGGCCAGGAGCTGTTCCGCCAGCTCTTCAGACAGCTTCGCTACCATGAGTCTTCAGGGCCCCTAGAAACTCTGAGCCGGCTCCGGGAACTCTGTCGCTGGTGGCTGAGGCCTGACGTTCTCTCCAAGGCACAGATCCTAGAGCTGCTGGTGCTGGAACAGTTCCTGAGCATCCTGCCTGGGGAGCTCCGGGTTTGGGTGCAGCTTCATAACCCTGAGAGTGGCGAGGAGGCTGTGGCCTTGCTGGAGGAGCTGCAGAGGGACCTTGATGGGACATCCTGGAGG
Seq A exon
GACCCGGGCCCTGCCCAGAGCCCAGATGTGCATTGGATGGGTACAGGAGCCCTGCGATCTGCACAGATATGGTCCCTTGCTTCACCTCTCAGGAGCAGCTCTGCTCTGGGGGACCACCTGGAGCCTCCCTATGAAATAGAAGCACGTGACTTCCTGGCTGGGCAATCCG
Seq C2 exon
ATACTCCTGCTGCCCAGATGCCTGCCCTTTTCCCGAGAGAGGGGTGCCCGGGAGACCAGGTAACACCAACCAGGTCCCTGACAGCCCAGCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000185219_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.315 A=0.231 C2=0.850
Domain overlap (PFAM):
C1:
PF0202312=SCAN=PU(97.9=65.7)
A:
PF0202312=SCAN=PD(0.1=0.0)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACGTTCTCTCCAAGGCACAG
R:
CCTGGTTGGTGTTACCTGGTC
Band lengths:
245-414
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)