MmuEX6070026 @ mm10
Exon Skipping
Gene
ENSMUSG00000047036 | Zfp445
Description
zinc finger protein 445 [Source:MGI Symbol;Acc:MGI:2143340]
Coordinates
chr9:122857103-122862344:-
Coord C1 exon
chr9:122861709-122862344
Coord A exon
chr9:122857470-122857638
Coord C2 exon
chr9:122857103-122857161
Length
169 bp
Sequences
Splice sites
3' ss Seq
TAACATTTTCTTCTTGCCAGGAT
3' ss Score
8.16
5' ss Seq
CTGGTGACT
5' ss Score
3.06
Exon sequences
Seq C1 exon
CACTCGCAAGGATACAGCAGTGATTTAGTGAAAGCAACAGATTTCTTTTGTGTTCATCTGTGTGACCCTGGATAGGAGTGATGCCTCCAGGCAGGTGGCATGCTGCCCGCTCAGCTCAGGTGTCAAGGGAACAAGGCTGCCTTCGAATGGTAAAAGAAGAGGAGGAGGATGGCTATATTTCAATGCAGACTGCCAGGCCACAGACACTTAACCGCCCTGGCCAGGAGCTATTCCGTCAGCTCTTTAGACAGCTTCGCTATCATGAATCTTCTGGGCCCCTAGAAACTCTGAGCCGGCTCCAGGAGCTCTGCCGCTGGTGGATGAGGCCTGATGTTCTTTCAAAAGCACAGATGTTAGAGTTGTTGGTCTTGGAGCAATTCCTGAGCATCTTGCCTGGAGAGCTCCGGACATGGGTCCAACTCCATTGCCCTGAGAGTGGTGCAGAGGTTGTGGCCCTGCTGGAAGAGCTGCAGAGGGATCTTGATGGAACCCCACTGAAG
Seq A exon
GATCCATGTCTTACTCAGAATCCAGATGTGCATTGGATAGGCACTAGTGCTCTGCAGCCCGCACAGATATGGTCCCCTGCATCACATCTCAAGAACAGTTCTGCTCTAGAGGACCACTTGGAGACTTCACATGGAATAGGAATTTGTGACGTCCTGGCTGAACAAACTG
Seq C2 exon
ATTCTCCTGCTGTCTCGGTGCCTGACTATTTCCAGTTAGAAGAGGGCATAGAATACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000047036-'6-11,'6-7,13-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.121 A=0.035 C2=0.000
Domain overlap (PFAM):
C1:
PF0202312=SCAN=PU(97.9=67.1)
A:
PF0202312=SCAN=PD(0.1=0.0)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGCCCCTAGAAACTCTGAG
R:
ATAGTCAGGCACCGAGACAGC
Band lengths:
258-427
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types