BtaINT0165504 @ bosTau6
Intron Retention
Gene
ENSBTAG00000046301 | ZNF445
Description
zinc finger protein 445 [Source:HGNC Symbol;Acc:HGNC:21018]
Coordinates
chr22:16373325-16373894:-
Coord C1 exon
chr22:16373726-16373894
Coord A exon
chr22:16373384-16373725
Coord C2 exon
chr22:16373325-16373383
Length
342 bp
Sequences
Splice sites
5' ss Seq
CCGGTACTT
5' ss Score
5.68
3' ss Seq
CACAGCTCTTTCTTCTTTAGATC
3' ss Score
9.93
Exon sequences
Seq C1 exon
GACCCAGCCCCTGCCCAGAGCCCAGATGTGCATTGGATGGGCACAGGAGCCCTGCGAGCCGCACAGATATGGCCCCCTGCTTCACCTCTCAGGAGCGGCTCGGCTCTGGGGGACCACCTGCAGCCTCCCTATGAAATAGGAGTGCGTGACTTCCTGGCTGGGCAACCCG
Seq A exon
GTACTTGCTGCCCGGCTCTAAGATCCCAGCTTGTGCCACACTTCCCGAACCTCCTATGATACCGTCTTTCCACCCTCTGTCCTCTCACTAGAATCCCTTCTGTCCTGGCCTTGAGCTCTGTGTCCTTTTTATCCTTCTGTGACCCACGTGTACCTGACTTTTCCTCCCATTGCACCCCCTGCTCCCTGACCCCAGCAGACATGGGGGAAATTTGAAATGGGCATTTAAAACAGCCCATACCTGCTTGCGGGGCCCAGGAGTCCTCTATGTGGGGGGAAGAGTGGGCTTCTCAGTGGGACGCTGGAACCGGGCTGCCCTTTCTCACAGCTCTTTCTTCTTTAG
Seq C2 exon
ATCCTCCTGCTGCACAGGTGCCTGCCCTTTGCTCGAAGGAGGGATGCGCAGACAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000046301:ENSBTAT00000065626:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.263 A=NA C2=0.600
Domain overlap (PFAM):
C1:
PF0202312=SCAN=PD(0.1=0.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGAGCCCAGATGTGCATTG
R:
CTGGTTGTCTGCGCATCCC
Band lengths:
214-556
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]